Curator Dashboard

The Comparative Genometrics website displays for sequenced genomes, three different genometric analyses: the DNA walk and the GC and TA skews during the initial phase. Although primarily focused on prokaryotic chromosomes, the CG website posts genometric information on paradigm plasmids, phages, viruses, and organelles. The genometric analyses are available via phylogenetic tree or alphabetical list. It also offers small genome information, for mitochondria, chloroplasts, viruses, bacteriophages, and plasmids.

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• SciCrunch
• 17 years ago - by Anonymous

A read summarization program, which counts mapped reads for the genomic features such as genes and exons.

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• SciCrunch
• 13 years ago - by Anonymous

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

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• SciCrunch
• 13 years ago - by Anonymous

Database providing information on structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. The Archive links the raw sequence information found in the Trace Archive with assembly information found in publicly available sequence repositories (GenBank/EMBL/DDBJ).

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• SciCrunch
• 13 years ago - by Anonymous

Medical school and medical research center connected to Indiana University. Its principal research and medical center is on Indiana University – Purdue University Indianapolis campus in Indianapolis.

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• SciCrunch
• 17 years ago - submitted by Andrea Stagg

This mailing list is for announcements about Bioconductor and the availability of new code and questions and answers about problems and solutions using Bioconductor.

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• SciCrunch
• 13 years ago - by Anonymous

Database integrating collagen biological and physicochemical properties with known variants. Web-based, interactive, graphical user interface displays data as annotations on collagen protein sequences. Collagen gene-level data are provided as custom tracks for display in the UCSC genome browser. COLdb currently includes 35,582 data points spanning collagen types I, II, and III, and, importantly, users can add their own data to the display. The database is the first comprehensive integration of disparate functional information on the three major fibrillar collagens, and the first electronic collection of mutations in the COL2A1 gene. Sponsors: This data base is supported by University of Leicester.

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• SciCrunch
• 17 years ago - by Anonymous

This blog will appeal to those dealing with the practical day to day work of biological data analysis and presentation.

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• SciCrunch
• 13 years ago - by Anonymous

The American Parkinson Disease Association, Inc. was founded in 1961 to ease the burden and find a cure for Parkinson''s disease. The organization focuses its energies on research, patient support, education and raising public awareness of the disease.<BR/> It offers Parkinson Disease news and updates, as well as connecting users to other Parkinson-related resources, such as referral centers, Parkinson events, and research grant information for the scientific community. It also offers access to Parkinson-related publications, as well as Young Onset Parkinson-related resources.<BR/> American Parkinson Disease Association Inc. is headquartered in Staten Island, New York.<BR/> :NIF thanks the <BR/> :<A HREF=http://www.pdf.org TARGET=_blank><BR/> :<U>Parkinson''s Disease FoundationU><BR/> :A><BR/> :<A HREF=http://www.pdf.org TARGET=_blank> A><BR/> :for their referral of this resource to us. <BR/>

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• SciCrunch
• 17 years ago - by Anonymous

CleanEx is a database which provides access to public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons. To achieve this goal, each single gene expression experiment is regularly mapped on a permanent target identifier consisting of a physical description of the targeted RNA. There is one entry per gene. To have a complete view of the transcript and its product, we also link each entry to the corresponding protein. We further provide the genomic position of the transcription start site from EPD, when available. Otherwise we give the annotated start site position in Ensembl.

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• SciCrunch
• 17 years ago - by Anonymous

The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes.<BR/> The CFGP provides important bioinformatic tools, such as BLAST search, ClustalW analysis, InterPro Scan, SignalP, and PSORT2, which are very common tools for the researchers in the field of genomics. Many of them have been executed in the unix environment, so some specific computing knowledge is required. In the CFGP, users can use these tools simply by clicking their mouse button. In addition, all of the results of the analysis will be stored in the CFGP, so you can easily share those results with other members.<BR/>

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• SciCrunch
• 17 years ago - by Anonymous

Database that describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds. This specialist database is dedicated to the display and analysis of genomic, structural and biochemical information on Carbohydrate-Active Enzymes (CAZymes). CAZy data are accessible either by browsing sequence-based families or by browsing the content of genomes in carbohydrate-active enzymes. New genomes are added regularly shortly after they appear in the daily releases of GenBank. New families are created based on published evidence for the activity of at least one member of the family and all families are regularly updated, both in content and in description. An original aspect of the CAZy database is its attempt to cover all carbohydrate-active enzymes across organisms and across subfields of glycosciences. One can search for CAZY Family pages using the Protein Accession (Genpept Accession, Uniprot Accession or PDB ID), Cazy family name or EC number. In addition, genomes can be searched using the NCBI TaxID. This search can be complemented by Google-based searches on the CAZy site.

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• SciCrunch
• 17 years ago - by Anonymous

The programs of study in the Department of Pharmacology and Toxicology are the Master of Science in Pharmacology and Toxicology and the Ph.D. programs in Biomedical Sciences and Environmental Sciences. The master&apos;s program is a research-based program that recruits students from universities as well as the military and industrial sectors. Faculty also participate in the summer research training program for minorities and persons with disabilities (STREAMS) as well as the Biomedical Science Exchange (BSE) a research and education with universities in Brazil.

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• SciCrunch
• 17 years ago - by Anonymous

A bioinformatic application created to work on sequence analysis by using NGS (Next Generation Sequencing) and sanger sequences.

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• 13 years ago - by Anonymous

The Department of Pharmacology and Physiology consists of faculty, fellows and students who are dedicated to cutting-edge scientific research, in order to work towards a better understanding of how the human body functions and to alleviate human diseases. The faculty is composed of distinguished scientists who are international leaders in the fields of cell signaling and signal transduction, neurodegenerative diseases and mechanisms of cell death, cardiovascular diseases and ion channels, drugs of abuse and mechanisms of addiction, and integrative biomedical sciences. The department promotes a strong training program for both graduate students and post-doctoral fellows, and many of our graduates have gone on to become leaders in academia, industry and government. The University of Rochester Medical Center is now in the process of unprecedented growth, which includes the opening of two new research buildings and the establishment of over fifty new research laboratories. The Department is enthusiastic about being a part of that growth in the research enterprise, as we aim to be one of the finest medical centers in the world.

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• SciCrunch
• 17 years ago - by Anonymous

Independent agency of the U.S. federal government that administers Social Security, a social insurance program consisting of retirement, disability, and survivor benefits.

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• SciCrunch
• 17 years ago - submitted by Andrea Stagg

The mission of the National Institute of Dental and Craniofacial Research (NIDCR) is to improve oral, dental and craniofacial health through research, research training, and the dissemination of health information. We accomplish our mission by: * Performing and supporting basic and clinical research; * Conducting and funding research training and career development programs to ensure an adequate number of talented, well-prepared and diverse investigators; * Coordinating and assisting relevant research and research-related activities among all sectors of the research community; * Promoting the timely transfer of knowledge gained from research and its implications for health to the public, health professionals, researchers, and policy-makers.

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• SciCrunch
• 15 years ago - submitted by Andrea Stagg

A plugin for the open-source MATLAB toolbox EEGLAB developed with the goal to facilitate integrated analyses of electrophysiological and oculomotor data. The plugin parses, imports, and synchronizes simultaneously recorded eye tracking data and adds it as extra channels to the EEG. Saccades and fixations can be imported from the eye tracking raw data or detected with an adaptive velocity-based algorithm. Eye movements are then added as new time-locking events to EEGLAB's event structure, allowing easy saccade- and fixation-related EEG analysis (e.g., fixation-related potentials, FRPs). Alternatively, EEG data can be aligned to stimulus onsets and analyzed according to oculomotor behavior (e.g. pupil size, microsaccades) in a given trial. Saccade-related ICA components can be objectively identified based on their covariance with the electrically independent eye tracker. All functions can be accessed via EEGLAB's GUI or called from the command line.

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• SciCrunch
• 14 years ago - by Anonymous

Resource out of service. Documented on February 24,2021.

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• 17 years ago - by Anonymous

News source including the entire bioproduct life cycle from early-stage R&D, to applied research including omics, biomarkers, as well as diagnostics, to bioprocessing and commercialization.

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• SciCrunch
• 13 years ago - by Anonymous