Curator Dashboard

A computational tool for analyzing the microRNA (miRNA) transcriptome in plants.

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• SciCrunch
• 13 years ago - by Anonymous

A software tool which can be used to identify both known and novel microRNAs from small RNA libraries deeply sequenced by Solexa/454/Solid technology.

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• SciCrunch
• 13 years ago - by Anonymous

A software tool to find microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis service that predicts whether a given mRNA is targeted by a set of miRNAs. ComiR uses miRNA expression to improve and combine multiple miRNA targets for each of the four prediction algorithms: miRanda, PITA, TargetScan and mirSVR. The composite scores of the four algorithms are then combined using a support vector machine trained on Drosophila Ago1 IP data.

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• SciCrunch
• 13 years ago - by Anonymous

Atlas of the brain and the disorders affecting it, aimed at general practitioners and specialists in training. It consists of three main parts: a description of the different parts of the normal brain and their functions, a description of the process of neurological control, and a description of 14 different brain disorders in psychiatry and neurology - as well as their cause, symptoms, and treatment.

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• SciCrunch
• 17 years ago - by Anonymous

A resource for animal miRNA-target interactions consisting of the Validated Targets component, a large, high-quality database of experimentally validated miRNA targets resulting from meticulous literature curation, and the Predicted Targets component, an integration of predicted miRNA targets produced by 11 established miRNA target prediction programs. April 27, 2013, the Validated Targets component of miRecords hosts 2705 records of interactions between 644 miRNAs and 1901 target genes in 9 animal species. Among these records, 2028 were curated from low throughput experiments. The Predicted Targets component of mIRecords integrates the predicted targets of the following miRNA target prediction tools: DIANA-microT, MicroInspector, miRanda, MirTarget2, miTarget, NBmiRTar, PicTar, PITA, RNA22, RNAhybrid, and TargetScan/TargertScanS. We would be glad to include your experimentally validated miRNA target data (published or unpublished) into miRecords., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a genome wide mapping data interpretation platform for NGS (ChIPSeq).

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• SciCrunch
• 13 years ago - by Anonymous

Software tool for base and quality calling of trace files from DNA sequencing instruments.

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• SciCrunch
• 13 years ago - by Anonymous

An open source package for primary data analysis on next-gen sequence data from images to basecalls. Currently Swift is targeted toward Solexa/Illumina sequencing, but is designed to be platform agnostic.

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• SciCrunch
• 13 years ago - by Anonymous

Software that provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Software that identifies protein binding sites from ChIP-seq and nucleosome positioning experiments.

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• SciCrunch
• 13 years ago - by Anonymous

The Division of Biology and Biomedical Sciences at Washington University in St. Louis offers exceptional doctoral training at one of the nations preeminent biomedical research centers. The Division consists of 12 doctoral training programs, 10 of which are ranked among the nations top 10.* :A collaborative, interdisciplinary approach to research and education is a hallmark of Washington University and the Division. As a university-wide consortium, the Division transcends departmental lines and removes traditional boundaries of scientific fields. Faculty and graduate students regularly cross disciplines, devising novel questions and approaches that might otherwise go unexplored. The Division currently consists of 685 graduate students and 410 faculty members from 32 university-wide departments..

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE,documented on August 16, 2019. Fugu genome is among the smallest vertebrate genomes and has proved to be a valuable reference genome for identifying genes and other functional elements such as regulatory elements in the human and other vertebrate genomes, and for understanding the structure and evolution of vertebrate genomes. This site presents version 4 of the Fugu genome, released in October 2004 by the International Fugu Genome Consortium. Fugu rubripes has a very compact genome, with less than 15 consisting of dispersed repetitive sequence, which makes it ideal for gene discovery. A draft sequence of the fugu genome was determined by the International Fugu Genome Consortium in 2002 using the ''whole-genome shotgun'' sequencing strategy. Fugu is the second vertebrate genome to be sequenced, the first being the human genome. This webpage presents the annotation made on the fourth assembly by the IMCB team using the Ensembl annotation pipeline. We are continuing with the gap filling work and linking of the scaffolds to obtain super-contigs.

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• SciCrunch
• 17 years ago - by Anonymous

The information in this manual is presented to assist health care professionals caring for cancer patients undergoing treatment with cytotoxics, hormones or biological response modifiers. It is designed primarily for pharmacists and nurses in general practice, and may also be of interest to the family physician who is treating a patient in consultation with an oncologist. Efforts have been made to include information specific to the use of these drugs in the child with cancer. Because of the nature of individual drug monographs, this manual does not deal with therapeutics. For treatment decisions, the reader is referred to the protocol by which the patient is being treated, to the British Columbia Cancer Agency''s Cancer Management Manual and to the most current literature. The Cancer Drug Manual also provides a drug index for physicians and patients. The BC Cancer Agency, an agency of the Provincial Health Services Authority, provides a province-wide, population-based cancer control program for the residents of British Columbia and the Yukon. The BC Cancer Agencys mandate covers the spectrum of cancer care, from prevention and screening, to diagnosis, treatment, and through to rehabilitation. The BC Cancer Agencys mandate is driven by a three-fold mission: -To reduce the incidence of cancer -To reduce the mortality rate of people with cancer -To improve the quality of life of people living with cancer

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• SciCrunch
• 17 years ago - by Anonymous

A microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent.

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• SciCrunch
• 13 years ago - by Anonymous

Software package that is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

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• SciCrunch
• 13 years ago - by Anonymous

This collection of tools stream-lines the processing of HiC data from raw sequence to contact matrices and beyond.

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• SciCrunch
• 13 years ago - by Anonymous

A bioinformatics tool for error correction of HTS read data.

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• SciCrunch
• 13 years ago - by Anonymous

The CIRRIE Database of International Rehabilitation Research currently contains almost 90,000 citations of international rehabilitation research published between 1990 and the present. The CIRRIE Database collects citations from all areas of rehabilitation and compiles them into one central source. In addition to indexing from mainstream journals and internet sites, CIRRIE also includes citations to resources not readily available to U.S. researchers. Over 5000 journals are represented in the Database and abstracts are available for most citations. A list of journals is now available. There are almost 90,000 citations currently indexed with citations added monthly. The database includes citations from 1990 to the present. It was created to facilitate the sharing of information and expertise in rehabilitation and disability research between the U.S. and other countries.

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• SciCrunch
• 17 years ago - by Anonymous

A parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous