Curator Dashboard

The NPAIRS (Nonparametric, Prediction, Activation, Influence, Reproducibility, re-Sampling) package provides a statistical resampling framework with GLM, PCA and CVA data analysis options forming the basic building blocks for benchmarking and comparing data processing choices and preprocessing pipelines using prediction and reproducibility performance metrics. The distribution package also includes flexible visualization and plotting tools for displaying the results of NPAIRS analyses. :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

:OsiriX is an image processing software dedicated to DICOM images (.dcm / .DCM extension) produced by medical equipment (MRI, CT, PET, PET-CT, ...) and confocal microscopy (LSM and BioRAD-PIC format). It can also read many other file formats: TIFF (8,16, 32 bits), JPEG, PDF, AVI, MPEG and Quicktime. It is fully compliant with the DICOM standard for image comunication and image file formats. OsiriX is able to receive images transferred by DICOM communication protocol from any PACS or medical imaging modality (STORE SCP - Service Class Provider, STORE SCU - Service Class User, and Query/Retrieve) . OsiriX has been specifically designed for navigation and visualization of multimodality and multidimensional images: 2D Viewer, 3D Viewer, 4D Viewer (3D series with temporal dimension, for example: Cardiac-CT) and 5D Viewer (3D series with temporal and functional dimensions, for example: Cardiac-PET-CT). The 3D Viewer offers all modern rendering modes: Multiplanar reconstruction (MPR), Surface Rendering, Volume Rendering and Maximum Intensity Projection (MIP). All these modes support 4D data and are able to produce image fusion between two different series (for example: PET-CT). Osirix is at the same time a DICOM PACS workstation for medical imaging and an image processing software for medical research (radiology and nuclear imaging), functional imaging, 3D imaging, confocal microscopy and molecular imaging. :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. A Java-based tool for managing and sharing MRI/DTI datasets, and related subject and protocol metadata. Data entry, data access, general query, reporting, analysis, and administrative operations occur through browser-based forms. NeuroServ works with a webserver (Tomcat) and a backend database (e.g., Postgres); a schema and over 40 forms are provided in the distribution. Support for DTI includes entry of multi-orientation raw DWI files, semi-automated normalization to the B0 image and quality filtering. Planned extensions include full DTI processing through image production and data sharing using the SSC incremental visiblity model.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 18, 2015. PV-Wave is a interactive programming language designed for data analysis. We have several programs written for creating, viewing, and measuring MRI images of brains. PV-Wave is a very powerful programming language with a very simple syntax. We reuse code from one program to write a new program that does something slightly different. This only takes us a few hours. If we used another language, like C++, our program turn around time would be days instead of hours.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

:iiV is an interactive brain imaging data display tool written in Java. It displays 3-D data set as slices perpendicular to the 3 major axis. Individual slice voxels are mapped thru a linear scaling, threshold and color table to displayable pixel values. Any number of slices from any number of data files may be arranged, annotated, overlaid, cropped, zoomed and rotated. iiV maintains the original data internally for mouse selection and display of original voxel values. If input locations map to a real world valued coordinates that mapping may be applied to display selected voxel locations in real coordinates. Slices may also include tracking crosshairs and automatically update to display the same region of the brain as selected in another slice. iiV includes a fairly complete set of editing commands including selection, drag, group, delete, and undo/redo commands. It also includes a script language for saving and reloading of the interactive display and creating animated demos. iiV supports reading ANALYZE, ECAT, ECAT7, DICOM, GIF, JPEG, PPM, Stimulate SDT, and raw data formats and saving what is displayed as scripts, GIF and PPM files. :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

An Antibody supplier

• Resource
• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

• Resource
• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Stroketool-CT is a user friendly MS-Windows based software system for calculation and visualization of enhanced CT perfusion imaging data sets of the brain. It contains features such as quantitative perfusion using SVD algorithms; DICOM compatibility; rapid calculations of rCBF, MTT, rCBV, TTP,Tmax; and interactive and automatic AIF-detection.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. <br/><br/>MRIVIEW is a software tool for viewing and manipulating volumetric MRI head data, and for using this data as an anatomical reference in studies of brain function. MRIVIEW supplies methods for reading in raw MRI data, segmenting structures in the data, reconciling coordinate systems between multiple imaging modalities, viewing combinations of anatomical and functional information, and building models of structures within the head. Recent extensions to MRIVIEW include an MEG/EEG forward simulator, and a parallelized multi-start multi-dipole MEG/EEG inverse procedure.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

A tool for visualization of structural and functional MRI volumes. Features include structural and functional overlay display of volume sections, volume annotation, ROI analysis, interfacing with FSL''s brain extraction, and 3D rendering. mri3dX should run on most unix workstations, but requires Motif and OpenGL/Mesa graphics libraries.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Unys is a Java Web Start application for viewing Synu polygonal and MicroBrightField Neurolucida datasets. Other formats, such as OBJ and COLLADA will be added shortly. Unys is still in a state of being actively developed. This software has replaced the previously existing Synuview application. Requirements: Java 1.5 or more recent. No software installation is required but Java Web Start must be pre-installed. Most modern computers will have this installed. Sponsors: this software is supported by the National Center for Microscopy and Imaging Research. Keywords: Dataset, Neurolucida, Software, Java, Application, Synu polygonal, Viewing,

• Resource
• SciCrunch
• 17 years ago - by Anonymous

VideoScribbler is a program that makes it possible to trace directly onto live video. It was developed to provide a way to outline and count cells in a video image. The program displays the live video image in a 640x480 window. Userrs can click and drag the mouse to outline cells, while releasing the mouse button will complete the outline and increment the "Object Count" display at the bottom of the window.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

A peer-reviewed encyclopedia written by the leading experts in their respective fields. It does not publish research or position papers, but rather living reviews that will be maintained by the future generation of experts via the process of curatorship. :Computational neuroscience, Neuroscience, Electrophysiology, Neuron, Network Dynamics , Brain Models, Synapse, Memory, Conditioning, Consciousness, Vision, Olfaction, Neuroimaging, Dynamical Systems, Oscillators, Synchronization, Pattern Formation, Chaos, Bifurcations, Simulation Environment, Artificial Neural Networks, Models of Neurons, Spiking Networks, Brain Theory, Recurrent Networks, Feedforwar, Networks, Graph Theory, Reinforcement Learning, Evolutionary Computation, Information Theory, Statistics, Signal Analysis, Pattern Recognition, Navigation and Control, Robotics :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Center for high-throughput DNA sequence generation and the accompanying analysis. The sequence data generated by the center's machines are analyzed in a complex bioinformatics pipeline, and the data are deposited regularly in the public databases at the National Center for Biotechnology Information (NCBI).

• Resource
• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 09, 2013. This tool is a program that allows you to calculate the head circumference based on MRI data. Using Fourier harmonics to parameterize the contour of the head this tool gives the length of the contour. This embedded tutorial software can automatically store the results in a Excel spreadsheet.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Last update 2004. :VOLUME-ONE is a general-purpose software for viewing volumetric image data. :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This software package provides two voxel-based image registration algorithms that are based on maximising Normalised Mutual Information (NMI). They are incorporated in a user-friendly command-line and graphical interface that includes a visualisation tool for 3D image pairs to permit analysis of registration results. These algorithms have been demonstrated on range of medical applications including brain, breast, liver, and cardiac data and results have been published.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The Alzheimer Research Forum is the web''s most dynamic scientific community dedicated to understanding Alzheimer''s disease and related disorders. It also contains a database of providers of antibodies directed against several hundred molecules and proteins of relevant to research on Alzheimer and other neurodegenerative diseases. The web site reports on the latest scientific findings, from basic research to clinical trials; creates and maintains public databases of essential research data and reagents, and produces discussion forums to promote debate, speed the dissemination of new ideas, and break down barriers across the numerous disciplines that can contribute to the global effort to cure Alzheimer''s disease. The ARF team of professional science writers and editors, information technology experts, web developers and producers all work closely with our distinguished and diverse Advisory Board to ensure a high-quality of information and services. We very much welcome our readers'' participation in all aspects of the web site. Sponsors: The Alzheimer Research Forum is an independent nonprofit organization. It is supported by grants and individual donations.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The Lundbeck Institute is pleased to present Psychotropics Online, a comprehensive guide to CNS compounds and products. A database of psychotropic and neurological drugs. Generic name, Trade name, Description, Code numbers, Monographies, Tranquilizers - Anxiolytics, Anxiolytics / Antipsychotics, Neuroleptics and Antipsychotics, Monoamine Oxidase Inhibitors, Antidepressants, Antidementia drugs, Sympathomimetics, Antiparkinsonians, Anticonvulsants, Hallucinogenic Agents, Additional Group, Biochemical profiles, Side-effects, Antipsychotics, Tranquilizers - anxiolytics, Tricyclic Antidepressants (TCAs), Selective Serotonin Reuptake Inhibitors (SSRIs), Selective Serotonin and Noradrenaline Reuptake Inhibitors (SNRIs), Selective Noradrenaline Reuptake Inhibitors (NARIs), MAO inhibitors (MAOIs), Sympathomimetics, Anticonvulsants, Lithium, Barbiturates, Street names, Terminal plasma half-lives, Orphan drugs

• Resource
• SciCrunch
• 17 years ago - by Anonymous