Curator Dashboard

Software tool to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files for directional, non-directional or paired-end sequencing. Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for Reduced Representation Bisulfite Sequencing data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data.The old version for Sanger sequences, Seqtrim, has been discontinued.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A next generation sequence quality trimming tool.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool that removes adapter sequences from DNA sequencing reads., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool as error corrector for Illumina reads. It is distributed and used with MaSuRCA, or it can be used independently.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Allows detecting and removing multiple alien sequences in both ends of sequence reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software program to remove residual adapter sequences from next generation sequencing reads. Used for cleaning of next-generation sequencing reads. AdapterRemoval v2 introduces improvements in throughput, through use of single instruction, multiple data (SIMD; SSE1 and SSE2) instructions and multi-threading support; handles datasets containing reads or read-pairs with different adapters or adapter pairs; provides simultaneous demultiplexing and adapter trimming; has ability to reconstruct adapter sequences from paired-end reads for poorly documented data sets; provides native gzip and bzip2 support.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A software package for building accurate ConSeqs from tagged reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software for discovering motifs that induce sequencing errors.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A laboratory information management system (LIMS) for a next-generation sequencing (NGS) laboratory within the existing Galaxy platform.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Open Source laboratory information management systems.

• Resource
• SciCrunch
• 13 years ago - by Anonymous