Curator Dashboard

A software tool for molecular biology text analysis. At ABNER''s core is a statistical machine learning system using linear-chain conditional random fields (CRFs) with a variety of orthographic and contextual features.

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• SciCrunch
• 13 years ago - by Anonymous

Script distributed with the HT-Seq Python framework for processing RNA-seq or DNA-seq data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

An efficient model-based base-calling algorithm for high-throughput sequencing.

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• SciCrunch
• 13 years ago - by Anonymous

An accurate, fast and easy-to-use base caller for the Illumina sequencing system, which significantly reduces the error rate and increases the output of usable reads.

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• SciCrunch
• 13 years ago - by Anonymous

Service where users are able to upload and store data, access bioinformatics tools, and perform analyses.

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• SciCrunch
• 13 years ago - by Anonymous

A mapping and analysis pipeline for short read data produced on the Illumina platform.

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• SciCrunch
• 13 years ago - by Anonymous

A command line-based pipeline framework for bioinformatics research.

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• SciCrunch
• 13 years ago - by Anonymous

An open-source software for mining next-gen sequencing datasets, focusing on post-alignment quality control, SNP and indel identification and annotation, RNA expression quantification, etc.

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• SciCrunch
• 13 years ago - by Anonymous

A comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noisy data.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool for Next Generation sequence analysis. Analytical partner for analysis of desktop sequencing data produced by Illumina iSeq, Miniseq, MiSeq, NextSeq, HiSeq, and NovaSeq systems, Ion Torrent Ion GeneStudio S5, PGM, and Proton systems as well as other platforms. Software runs on Windows Operating System, which provides biologist friendly interface. It does not require scripting or other bioinformatics support.

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• SciCrunch
• 13 years ago - by Anonymous

Automates the primary analysis of massive parallel sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Provides the tools you need to analyze rare and common variants, detect differential expression patterns, discover reliable biomarker profiles, and incorporate pathway information into your analysis workflows.

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• SciCrunch
• 13 years ago - by Anonymous

An integrated collection of user-friendly, yet powerful analytic tools for managing, analyzing, and visualizing multifaceted genomic and phenotypic data.

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• SciCrunch
• 13 years ago - by Anonymous

With their unique combination of proprietary algorithms and comprehensive data background, all our solutions do more than enable you to efficiently and effectively analyze and interpret biological data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Software for next-gen sequence assembly and analysis in a single, integrated package.

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• SciCrunch
• 13 years ago - by Anonymous

Commercially available software for visualization and analysis of next generation sequencing data. Used for viewing, exploring, and sharing of NGS analysis results. Complete toolkit for genomics, transcriptomics, epigenomics, and metagenomics in one program.

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• SciCrunch
• 13 years ago - by Anonymous

A software program for correcting errors in sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Error correction algorithm designed for short-reads from next-generation sequencing platforms such as Illumina''s Genome Analyzer II.

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• SciCrunch
• 13 years ago - by Anonymous

An error correction algorithm for correcting reads from DNA sequencing platforms such as the Illumina Genome Analyzer or HiSeq platforms or Roche/454 Genome Sequencer.

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• SciCrunch
• 13 years ago - by Anonymous

Software Java pipeline for trimming tasks for Illumina paired end and single ended data. Flexible Trimmer for Illumina Sequence Data. Pair aware preprocessing tool optimized for Illumina next generation sequencing data. Includes several processing steps for read trimming and filtering. Operating systems Unix/Linux, Mac OS, Windows.

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• SciCrunch
• 13 years ago - by Anonymous