Curator Dashboard

Scientific Transparency (SciTran) is a software project that has grown out of the Project on Scientific Transparency at Stanford University. At the heart of SciTran is a scientific data management system – SDM – designed to enable and foster reproducible research. SciTran SDM delivers efficient and robust archiving, organization, and sharing of scientific data. We have developed the system around neuroimaging data, but our goal is to build a system that is flexible enough to accomodate all types of scientific data – from paper-and-pencil tests to genomics data. SDM will also allow for the sharing of data and computations between remote sites. SciTran is open-source software, released under the MIT license. Our code is hosted on GitHub. Feel free to try it out or to contribute. Commercial support for SciTran SDM is available through our partners at Flywheel. Check out their demo, if you''d like to give SDM a quick try.

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• SciCrunch
• 12 years ago - submitted by

Mass spectrometry Interactive Virtual Environment (MassIVE) is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. Data repository for proteomics data.

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• SciCrunch
• 12 years ago - submitted by Anita Bandrowski

A resource for managing study data collected by the Northwestern University neuroimaging community. It includes a secure database, automated pipelines for processing managed data, and tools for exploring and accessing the data. Access to data in the NUNDA is restricted to users authorized by the specific study's investigators. The NUNDA is hosted by the Neuroimaging & Applied Computational Anatomy Lab, and it is modeled after the Washington University's Central Neuroimaging Data Archive (CNDA). The NUNDA is powered by XNAT, an open source software package for managing neuroimaging and related data.

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• SciCrunch
• 12 years ago - submitted by Anita Bandrowski

Volume Visualization and Naviagtion Tool (VVNT) is a platform to visualize, navigate, process and analyze the multi-modality multi-dimensional medical images. Image processing functions from the Insight Registration and Segmentation tool kit (ITK), Volume visualization functionality from the Visualization tool kit (VTK) are seamlessly integrated into this application. It is built as a Multi-Document Interface (MDI) application, so that several windows can be opened, several operations compared.Some of the current features include * Opens all formats of the DICOM files. * Performs basic image processing functions, contrast brightness adjustments, zooming, panning and other operations. * Surface rendering and Maximum Intensity Projections. * Rotate the rendered volume by specified direction and angle * Automatic segmentation / object extraction * Voxel counts and statisticsSeveral volume measurements and processing functions are currently being added.

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• SciCrunch
• 17 years ago - by Anonymous

SNAP (Small-world Network Analysis and Partitioning) is an extensible parallel framework for exploratory analysis and partitioning of large-scale networks. SNAP is implemented in C, uses OpenMP primitives for parallelization, and targets sequential, multicore, and symmetric multiprocessor platforms. Our intent with SNAP is to provide a simple and intuitive interface for network analysis and application design, hiding the parallel programming complexity from the user. In addition to path-based, centrality, and community identification queries on large-scale graphs, we support commonly-used preprocessing kernels and quantitative measures that help understand the global network topology. The latest version of SNAP (0.4) was released in August 2010. Sponsors: This work was supported in part by NSF Grants CAREER CCF-0611589, NSF DBI-0420513, ITR EF/BIO 03-31654, IBM Faculty Fellowship and Microsoft Research grants, NASA grant NP-2005-07-375-HQ, and DARPA Contract NBCH30390004. Keywords: network, analysis, software, graph, traversal, betweenness centrality, community, identification, multicore,

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• SciCrunch
• 17 years ago - by Anonymous

NeuGen is a tool for the efficient generation and description of dendritic and axonal morphology of realistic neurons and neural networks in 3D. :NeuGen builds real neural network geometries and is based on experimental data. The ''in silico'' neurons are based on cells of cortical columns in the neocortex. :L4 spiny stellate neurons, L2/3 pyramidal cells, L5A and L5B pyramidal cells, L4 star pyramidal cells, measuring of morphological paprameters (This is misspelled so not sure we can use), .hoc files, .dx resp. .net files, Via .net files, Data visualization software, OpenDX DataExplorer, simulation software, NEURON, Anatomical Fingerprints, stochastic model, Electromagnetic Simulation Software :

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• SciCrunch
• 17 years ago - by Anonymous

A networking tool for European researchers abroad. It provides information about research in Europe, European research policy, opportunities for research funding, for international collaboration and for trans-national mobility. Membership is free. :The objective of EURAXESS Links is a flourishing network of European researchers, scientists and scholars abroad. The network is already running in the USA since 2005 and has been launched in Japan in June 2008. The members of the network are informed about European Union research policies and made aware of career opportunities in Europe as well as opportunities for collaboration with Europe. The multidisciplinary network involves researchers at all stages of their careers and allows them to become well connected amongst themselves and in Europe, ensuring that they are recognised as an important resource for the European Research Area, whether they remain abroad or choose to return. :Through the success of the network, EURAXESS Links is intended to contribute to the improvement of Europe''s position in the global competition for talent, and the reinforcement of research collaboration. :EURAXESS Links focuses on three types of activity: networking of researchers, information dissemination and helping expatriate researchers to collaborate with colleagues in Europe or to return to rewarding careers in Europe. Membership of EURAXESS Links is free. :social networking; people resource :

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• SciCrunch
• 17 years ago - by Anonymous

It is an international non-profit organization dedicated to advancing science around the world by serving as an educator, leader, spokesperson and professional association. In addition to organizing membership activities, AAAS publishes the journal Science, as well as many scientific newsletters, books and reports, and spearheads programs that raise the bar of understanding for science worldwide. :AAAS History: Founded in 1848, AAAS serves some 262 affiliated societies and academies of science, serving 10 million individuals. Science has the largest paid circulation of any peer-reviewed general science journal in the world, with an estimated total readership of one million. The non-profit AAAS is open to all and fulfills its mission to advance science and serve society through initiatives in science policy; international programs; science education; and more. For the latest research news, log onto EurekAlert!, the premier science-news Web site, a service of AAAS. :Membership and Programs: Open to all, AAAS membership includes a subscription to Science. Four primary program areas fulfill the AAAS mission: * Science and Policy * International Activities * Education and Human Resources * Project 2061 :AAAS Mission: AAAS seeks to advance science, engineering, and innovation throughout the world for the benefit of all people. To fulfill this mission, the AAAS Board has set these broad goals: * Enhance communication among scientists, engineers, and the public; * Promote and defend the integrity of science and its use; * Strengthen support for the science and technology enterprise; * Provide a voice for science on societal issues; * Promote the responsible use of science in public policy; * Strengthen and diversify the science and technology workforce; * Foster education in science and technology for everyone; * Increase public engagement with science and technology; and * Advance international cooperation in science. :

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• SciCrunch
• 14 years ago - by Anonymous

Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology at the University of Michigan :Animal Diversity Web Has: Thousands of species accounts about individual animal species. These may include text, pictures of living animals, photographs and movies of specimens, and/or recordings of sounds. Students write the text of these accounts and we cannot guarantee their accuracy. Descriptions of levels of organization above the species level, especially phyla, classes, and in some cases, orders and families. Hundreds of hyperlinked pages and images illustrate the traits and general biology of these groups. Professional biologists prepare this part. :Animal Diversity Web Is An Online Encyclopedia: ADW is a large searchable encyclopedia of the natural history of animals. Every day, thousands of classroom students and informal visitors use it to answer animal questions. Other sites specialize in local, endangered, or particular kinds of animals. We aim to be as comprehensive as possible. :A Science Learning Tool: ADW facilitates inquiry-driven learning, that is, teaching about science by leading students to use the methods of science. Our large database is structured, providing consistent information for all species to foster comparisons. An advanced search tool allows a user to call up species accounts fitting any combination of descriptors. Students can explore for patterns and relationships, learn how to frame and answer scientific questions and, with the help of a good teacher, experience the excitement and satisfaction of doing science. Our long-term goal is to create a database rich enough that students can discover for themselves basic concepts in ecology and conservation biology. :A Virtual Museum: ADW provides a way to make the contents of research museums available globally for teaching and research. So far, our efforts have been directed mainly at mammals. Photographs of scientific specimens are available for representative species from most mammal families. We''ve also included several hundred Quick Time Virtual Reality Movies of skulls. These allow the user to rotate the specimen, providing an excellent impression of its 3-dimensional structure. We''ve written in depth about and illustrated many of the characteristics of interest to students of mammals. An important goal for the future is to expand to cover other groups of animals and include other media such as animal behavior video. :Wiki features, database, teaching tool :

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• SciCrunch
• 17 years ago - by Anonymous

Progressive Supranuculear Palsy (PSP) is a little known but fatal degenerative brain disease that is often misdiagnosed as Alzheimers or Parkinsons disease. Only by becoming more aware of PSP and the devastating effects on its victims and their families can we begin to work toward more effective treatments and eventually a cure. :CurePSP has always believed that truly effective clinical interventions will follow good, solid basic scientific research. For this reason, CurePSP promotes research that helps generate an integrated picture of PSP and CBD at the molecular and cellular levels. CurePSP believes that in the long term, research of this nature will prove indispensable in developing a prevention or cure for PSP and CBD. :CurePSP has carefully structured its research program and has identified the programs that have been the most successful and those that need strengthening. With an increased research budget made possible through improved donor support, CurePSP will be able to markedly intensify the efforts to cure the disease in a way that promises relief for those afflicted today as well as hope for those who may be afflicted tomorrow. :grant :

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 26,2023. CCAM is one of five National Technology Centers for Networks and Pathways, NTCNP, funded throught the NIH Technology Center for Networks and Pathways, TCNP. CCAM integrates new microscope technologies for making quantitative in vivo live cell measurements with new physical formulations and computational tools that will produce spatially realistic quantitative models of intracellular dynamics. :The overarching rationale for CCAMs research as a TCNP is that polarity in networks and pathways is determined by the spatial organization, subcellular distribution, dynamic behavior, interactions and functions of specific molecules within the cell. To investigate these relationships, we use a tripartite approach described as: :1) Measure - develop new tools for measuring spatially resolved dynamic behavior of molecules in cells, :2) Model - develop new methods for spatial modeling of biological systems. :3) Manipulate - develop new techniques for manipulating the spatial distribution of molecules in living cells. :Microscopy contrast enhancement protocol, biophotonics, subcellular :

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 16, 2013. The resource redirects to its parent, OSSP. Project seeking to increase the transparency and accessibility of the scientific research process by connecting researchers with an additional source of funding - microinvestments received from the broader online community. In exchange for these public investments, researchers will maintain research logs detailing the play-by-play progress made in their project, as well as publishing all of their data in a public database under a science commons license. These research projects, in turn, will serve to continually update a research-based neuroscience-based human brain & body curriculum.

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• SciCrunch
• 15 years ago - by Anonymous

An Antibody supplier

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• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

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• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

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• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

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• SciCrunch
• 14 years ago - by Anonymous

An Antibody supplier

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• SciCrunch
• 14 years ago - by Anonymous

It fosters Interdisciplinary research, teaching, and service activities linked to health and development in Nigeria and resource limited settings of the developing world. :OBJECTIVES OF THE CENTRE: The Institute helps strengthen and sustain the interests and activities of the science community by: :Facilitation of international contacts for program development and training. :* Advocacy for better equity in global health investments. :* Assistance in securing resources for international activities. :* Standardization and facilitation of overseas administrative approaches. :* Improved communication through grand rounds, seminars, and discussion forums. :* Taking up public enlightenment campaigns and public health education :* Active partnerships with institutions in Nigeria and abroad that share the Institute''s goals and wish to partner with CSIT faculty, staff, and students. :* Publishes the JEN Biomedicine, an international journal that gives unfettered access to research from Nigeria and other parts of Africa and the world. :* It''s CSIT Service Centre that helps with works and writing of scientists to make them acceptable for publication. The centre is equipped with research aids and staff that can help out with planning, executing, writing, graphic works including black and white and colour photos, editing research papers to make them acceptable by journals of interest. You can also undertake statistical analyses. In particular preparing journal figures, peer-review before publication, and statistical analyses. :* It''s Teaching Aids Centre that provides teaching aids to institutions and for workshops and conferences. Has in store models for studying behaviour including Elevated plus, Y, T, Radial-arm, Light/Dark Box, Open Box mazes. Available also are projectors, image analysers, computers, scanners, microscopes, microscope slides, animal skeletons, fixed animal tissues for biology and anatomy, patch clamping, stereotaxic equipment and methods, etc. The Centre can also teach you how to use any of the above. :

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• SciCrunch
• 14 years ago - by Anonymous

This web resource allows the user to search and rank 23,517 programs at 2,356 universities based on the users priorities. Data come from the National Science Foundation, the National Research Council, and the National Center for Education Statistics. The graduate school guide has been made possible by generous support from: :* The Alfred P. Sloan Foundation :* The Burroughs Wellcome Fund :The Center for Science and the Media served as the fiscal sponsor for the project. :Jobs board, Career development, Graduate training program list :

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• SciCrunch
• 14 years ago - by Anonymous

The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data. The database contains over 6500 metabolite entries including both water-soluble and lipid soluble metabolites as well as metabolites that would be regarded as either abundant (> 1 uM) or relatively rare (< 1 nM). Additionally, approximately 1500 protein (and DNA) sequences are linked to these metabolite entries. Each MetaboCard entry contains more than 100 data fields with 2/3 of the information being devoted to chemical/clinical data and the other 1/3 devoted to enzymatic or biochemical data. Many data fields are hyperlinked to other databases (KEGG, PubChem, MetaCyc, ChEBI, PDB, Swiss-Prot, and GenBank) and a variety of structure and pathway viewing applets. The HMDB database supports extensive text, sequence, chemical structure and relational query searches. Two additional databases, DrugBank and FooDB are also part of the HMDB suite of databases. DrugBank contains equivalent information on ~1500 drugs while FooDB contains equivalent information on ~2000 food components and food additives. The simple text query supports general text queries of the entire textual component of the database. Clicking on the Browse button generates a tabular synopsis of the HMDB''s content. This browse view allows users to casually scroll through the database or re-sort its contents. Clicking on a given MetaboCard button brings up the full data content for the corresponding metabolite. The Biofluids button generates hyperlinked tables listing normal and abnormal concentrations of different metabolites for 7 different biofluids. The ChemQuery button allows users to draw or write a chemical compound and to search HMDB for chemicals similar or identical to the query compound. The TextQuery button supports a more sophisticated text search of the text portion of HMDB. The SeqSearch button allows users to conduct BLAST sequence searches of the 5500 sequences contained in HMDB. Both single and multiple sequence BLAST queries are supported. The DataExtractor button opens an easy-to-use relational query search tool that allows users to select or search over various combinations of subfields. The DataExtractor is the most sophisticated search tool for HMDB. The MS Search allows users to submit Mass spectral files (MoverZ format) that will be searched against the HMDB''s library of MS/MS spectra. This allows the identification of metabolites from mixtures via MS/MS spectroscopy. The NMR Search allows users to submit peak lists from 1H or 13C NMR spectra (both pure and mixtures) and to have these peak lists compared to the NMR libraries contained in the HMDB. This allows the identification of metabolites from mixtures via NMR spectroscopy. The Download button provides links to collected sequence, image and text files associated with the HMDB. The HML Home button links to the Human Metabolome Library (HML) home page. The HML lists metabolites that can be ordered for a fee by researchers around the world. The Explain button lists statistics and source data used to assemble the HMDB. Sponsors: This project is supported by Genome Alberta & Genome Canada, a not-for-profit organization that is leading Canada''s national genomics strategy with $600 million in funding from the federal government.

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• SciCrunch
• 17 years ago - by Anonymous