Curator Dashboard

Software application as computational workflow for detecting coordinates of microbial-like or human-like sequences in eukaryotic and procaryotic reference genomes.

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• 1 year ago - submitted by Nikolay Oskolkov

Software application for supplementary files and notebooks to recreate figures.

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• 1 year ago - submitted by Edyta Vieth

Software Camiels scATAC-seq analysis pipeline.

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• 1 year ago - submitted by Edyta Vieth

Software application as convolutional neural network for inference of gene-regulatory relationships across pseudotime-ordered single-cell trajectories. Used for depicting pseudotime-lagged causality for accurate gene-regulatory inference.

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• 1 year ago - submitted by Edyta Vieth

Core team designs, builds and tests instruments, tools, and software that enable novel scientific investigation. Offers expertise in Data acquisition and analysis; Machine vision and image processing; Precision machining; Embedded systems design and programming; Laser, microscopy, and optical imaging systems engineering; Custom circuit design; Novel sensor systems; Lab automation, robotics and motion control; Mechanical design, machined and/or fabricated components and assemblies; Process automation.

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• 1 year ago - by Anonymous

Open-source, cross-platform software for ecological and evolutionary meta-analysis.

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• 1 year ago - by Anonymous

Biotech company founded in Shanghai Hi-Tech Park. Global supplier and service provider of RNAi products and services for RNAi, gRNA, mRNA therapeutics and RNA biomarkers. Provides siRNA chemical synthesis, which include RNA monomer synthesis technology, custom and chemically-modified siRNA oligo synthesis technology, nucleic acid fluorescent labeling technology, and many nucleotide chemical modification technologies.

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• 1 year ago - by Anonymous

Software application for classification of heterogeneous brain MRI data. Used for white matter-related classification of heterogeneous brain FLAIR MRIs.

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• 1 year ago - by Anonymous

Software application for BTE RAG implementation for DMDB QA datasets. Provides implementation of BTE-RAG framework, designed specifically for retrieval-augmented question answering (QA) in biomedical contexts. BTE-RAG leverages explicit mechanistic knowledge retrieval from BioThings Explorer (BTE) to significantly enhance the accuracy and reliability of large language models (LLMs) on biomedical benchmarks.

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• 1 year ago - submitted by Janet Joy

Software variant annotation toolkit for GBA gene variants detected from Illumina/Gauchian tool. Command-line tool designed to annotate tsv files generated by the Illumina/Gauchian tool.

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• 1 year ago - submitted by Anand Maurya

Software application as ensemble approach to rank putative causal transcription factors that regulate set of query genes by prediction confidence.

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• 1 year ago - by Anonymous

A variant annotator for GBA variants called by Illumina Gauchian tool.

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• 1 year ago - submitted by Anand Maurya

Collection of software tools for scaffolding and improving modern genome assemblies. Reference-based scaffolder. Used for fast and flexible genome assembly scaffolding and improvement.

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• 1 year ago - by Anonymous

Core provides researchers with access to equipment in three main pipelines: Cell and tissue imaging resources, including microscopes and a slide scanner; Flow cytometry, including analytical flow cytometry and cell sorting; Mass cytometry (CyTOF). Provides consultation services including panel and experiment design, sample preparation tips and technical troubleshooting, training for independent use on select equipment, data acquisition and cell sorting.

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• 1 year ago - by Anonymous

Software methylation analysis pipeline for genome graph. Genome-graph-based DNA methylation analysis using whole genome bisulfite sequencing.

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• 1 year ago - by Anonymous

Consortium to characterise and improve understanding of full spectrum of human genomic variation. HGSVC utilises the latest sequencing technologies to create high-quality maps of human structural variation, developing new tools for SV discovery and analysis. Consortium involves many groups internationally.

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• 1 year ago - by Anonymous

NIH-funded project that aims to engage scientists and bioethicists in creating human pangenome reference and resource that represents global human genomic variation. In the process of creating the pangenome, the HPRC is developing improved technology for genome assembly and a next-generation tool ecosystem that leverages the pangenome for comprehensive analyses.

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• 1 year ago - by Anonymous

Software pipeline to detect Transposable Elements transcripts. Used to identify TE-derived promoters and transcripts using transcriptomic data from multiple sources, including short-read RNA-seq data, long-read RNA-seq data and single cell RNA-seq data.

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• 1 year ago - by Anonymous

Software for simulation of RNA-seq reads. Combines flexible and highly configurable design with detailed simulation of entire library preparation and sequencing pipeline and is designed to include effects of polyA selection and RiboZero for ribosomal depletion, hexamer priming sequence biases, GC-content biases in polymerase chain reaction (PCR) amplification, barcode read errors and errors during PCR amplification.

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• 1 year ago - by Anonymous

Software tool as robust and configurable RNA expression simulator. Configurable and modular program allowing RNA expression emulation.

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• 1 year ago - by Anonymous