Curator Dashboard

An automated variant annotation pipeline designed for facilitating target discovery for family-based sequencing studies.

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• SciCrunch
• 13 years ago - by Anonymous

Software to make Approximate Bayesian Computation inferences about population history using Single Nucleotide Polymorphism, DNA sequence and microsatellite data.

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• SciCrunch
• 13 years ago - by Anonymous

Source code providing a cost-effectiveness metric for guiding the design of large-scale RNA-seq differentially expressed (DE) studies.

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• SciCrunch
• 13 years ago - by Anonymous

Optimized GPU-based software to efficiently measure the quantitative phylogenetic similarity among massive amount of microbial community samples.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for predicting genome-wide co-binding between biological regulators such as Transcription factors (TFs).

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• SciCrunch
• 13 years ago - by Anonymous

Software that combines digital gene expression (DGE) tags, RNA-Seq, tiling array expression data and species-comparison to explore new transcriptional regions and their specific biological features, particularly tissue expression or conservation.

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• SciCrunch
• 13 years ago - by Anonymous

A genome browser specialized in next-generation sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Software for decoding error-correcting barcodes.

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• SciCrunch
• 13 years ago - by Anonymous

Software to generate a visual representation of sRNAs and user-imported genomic features. The tool may be run on its own or from other tools, e.g. miRCat.

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• SciCrunch
• 13 years ago - by Anonymous

A platform and application suite for bringing together omics and clinical data.

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• SciCrunch
• 13 years ago - by Anonymous

Software for detecting differential features across the entire spectrum, including the lower counts.

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• SciCrunch
• 13 years ago - by Anonymous

Software using a statistical approach, based on a two-stage Poisson model, for modeling RNA sequencing data and testing for biologically important changes in gene expression.

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• SciCrunch
• 13 years ago - by Anonymous

Software that calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as ''RPKM'' or by the ''DESeq'' or ''edgeR'' package.

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• SciCrunch
• 13 years ago - by Anonymous

A database that houses annotations of human splice isoforms. It adds reliable protein structural and functional data and information from cross-species conservation. A visual representation of the annotations for each gene allows users to easily identify functional changes brought about by splicing events. In addition to collecting, integrating and analyzing reliable predictions of the effect of splicing events, it also selects a single reference sequence for each gene, termed the principal isoform, based on the annotations of structure, function and conservation for each transcript.

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• SciCrunch
• 13 years ago - by Anonymous

Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A public database holding PCR primers for popular DNA methylation analysis methods to prevent time-consuming primer design and experimental optimisation.

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• SciCrunch
• 13 years ago - by Anonymous

Software for automatic detection of absolute segmental copy numbers and genotype status in complex cancer genome profiles measured by single-nucleotide polymorphism (SNP) arrays. The method is based on pattern recognition of segmented and smoothed copy number and allelic imbalance profiles. The method performs well even for poor-quality data, low tumor content, and highly rearranged tumor genomes.

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• SciCrunch
• 13 years ago - by Anonymous

A database for histone mutations and their phenotypes.

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• SciCrunch
• 13 years ago - by Anonymous

A database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells.

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• SciCrunch
• 13 years ago - by Anonymous

Datbase and web-based system for visualization and analysis of genome-wide methylation data of human cancers.

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• SciCrunch
• 13 years ago - by Anonymous