Curator Dashboard

Software that provides one-to-many alignments of reactions in a pair of metabolic pathways.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing.

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• SciCrunch
• 12 years ago - by Anonymous

Software to calculate the number of significant SNPs in pathway divided by the number of SNPs in pathway.

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• SciCrunch
• 12 years ago - by Anonymous

A utility that uses a phylogenetic approach to refine orthology inferences made by graph-based (or other) methods.

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• SciCrunch
• 12 years ago - by Anonymous

A software package containing implementations of efficient algorithms for two common problems in phylogenetics: estimating DNA/protein sequence distances and reconstructing a phylogeny from a distance matrix.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 28,2023. Software program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

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• SciCrunch
• 12 years ago - by Anonymous

A modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to predict the conformational epitopes from 3D structures.

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• SciCrunch
• 12 years ago - by Anonymous

A large-scale whole genome simulation tool which generates large numbers of whole genomes with known sequence characteristics based on direct sampling of experimentally known or theorized variations.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to locate all copies of sequences in a reference sequence using read-pairs.

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• SciCrunch
• 12 years ago - by Anonymous

Software that uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy.

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• SciCrunch
• 12 years ago - by Anonymous

Free software tool for visualisation and processing of experimental and simulated nuclear magnetic resonance (NMR) spectra.

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• SciCrunch
• 12 years ago - by Anonymous

A highly flexible software toolbox for processing 1D and 2D NMR and EPR spectra under MATLAB, creating high-quality 1D, 2D or 3D plots from the spectra and printing them in every type of format that is supported by MATLAB.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Python-based environment that provides a scriptable framework for efficient access to manufacturers'' proprietary data files via mzAPI.

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• SciCrunch
• 12 years ago - by Anonymous

An application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

Software that enables rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Java library that parses X!Tandem XML result files into an easily accessible and fully functional object model.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a user-friendly, lightweight and open-source graphical user interface for configuring and running the freely available OMSSA and X!Tandem search engines simultaneously.

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• SciCrunch
• 12 years ago - by Anonymous

A Java library to parse the msf files that constitute the output of Proteome Discoverer.

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• SciCrunch
• 12 years ago - by Anonymous