Curator Dashboard

A generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms.

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• SciCrunch
• 12 years ago - by Anonymous

Software that automates the finishing process using long sequence reads in a reference-guided assembly process.

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• SciCrunch
• 12 years ago - by Anonymous

Contigs from a draft assembly generated by a different assembler can be joined using PacBio long reads.

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• SciCrunch
• 12 years ago - by Anonymous

Open source (GPL) software providing an interactive, high quality molecular visualization system.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a graphical front end for computational chemistry programs.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to facilitate chemical similarity calculations.

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• SciCrunch
• 12 years ago - by Anonymous

A full-featured and flexible user-friendly open source software application, which is able to estimate toxic hazard by applying a decision tree approach.

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• SciCrunch
• 12 years ago - by Anonymous

Fast motif detection algorithm for subgraph size no more than 6.

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• SciCrunch
• 12 years ago - by Anonymous

A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation.

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• SciCrunch
• 12 years ago - by Anonymous

A software that facilitates and improves the design of chemical combinatorial libraries.

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• SciCrunch
• 12 years ago - by Anonymous

An interactive chemical molecule sketching tool, and molecular spreadsheet data entry application.

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• SciCrunch
• 12 years ago - by Anonymous

A connected-components based fast algorithm for network alignment.

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• SciCrunch
• 12 years ago - by Anonymous

Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks.

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• SciCrunch
• 12 years ago - by Anonymous

Software using a reference-free method for detecting clusters of breakpoints from the chromosomal rearrangements.

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• SciCrunch
• 12 years ago - by Anonymous

A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics.

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• SciCrunch
• 12 years ago - by Anonymous

A metabolite identification software using tandem mass spectrometry and kernel methods.

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• SciCrunch
• 12 years ago - by Anonymous

An algorithm implemented in Matlab, Python and R that uses matrix multiplications to simultaneously calculate the Kruskal-Wallis test statistic for several millions of marker-trait combinations at once.

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• SciCrunch
• 12 years ago - by Anonymous

A Java-based proteomics cloud computing pipeline system for peptide and protein identifications.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a user-friendly and lightweight graphical user interface for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

A software library containing code shared by many research projects, amongst others containing panels for visualizing spectra and chromatograms and objects for representing peptides and proteins etc. This library can be of use to other research groups doing computational proteomics.

• Resource
• SciCrunch
• 12 years ago - by Anonymous