Curator Dashboard

An online, open access journal that offers rapid and informed peer review of submitted papers. Users can submit their to-be-published papers to eLife, where they will be peer reviewed online by active scientists. If papers need essential revisions before they can be published, the recommended revisions are compiled into a single set of instructions and sent to the user. Users can resubmit their revised papers to eLife or request their papers to be peer reviewed by other open access journals.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A web application which modifies the online use of scientific articles published in eLife. eLife Lens is a tool created by eLife that enables users to explore figures, figure descriptions, and references while keeping their place in the article text. Users can search for papers by subject, organism, article type, and/or top authors.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

An international consortium whose goals are to enable faster comparative studies and develop tools that make analysis accessible to the wider scientific community. InterMOD is an open source data warehouse where users can query and input their own data, access analysis tools, and create their own InterMine. Five core mines make make up InterMOD: RGD, SGD ZFIN, MGI, and WormBase.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Web-based tool that predicts subcellular localization and GO molecular function of proteins. Proteome Analyst has the ability to explain its predictions and gives users the ability to run a large set of tools on their proteins.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A collection of journals and articles pertaining to the social sector. IssueLab contains thousands of case studies, evaluations, white papers, and issue briefs addressing current global social problems.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which reduces the number of voxels used to represent a volumetric dataset by means of subsampling, i.e., computes a smaller version of a given dataset. Stacks can be selected from the disk by point and click and users are free to specify the new dimensions as actual pixels or as a percent of the original dimensions. The current version is Version 1.0, last updated on February 10, 2003.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which is used to create navigable visuals of neural structures. The current version of the program accepts NeuroZoom ASCII files as input. Users can visit CNIC's online repository for a full list of free, available models. The current version of the software available is Version 1.2, last updated on July 13, 2004.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which enables the visualization of datasets obtained from Confocal Laser Scanning Microscopy (CLSM). P-View allows users to interact with a pre-computed model using a flight simulator type interface. The program makes use of several optimizations to allow visualization of large objects using standard PC workstation hardware, including the speed up techniques Level of Detail and Frustum Culling. The current version of this software is Version 1.2.1, last updated on October 1, 2002.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

The source code for VIAS software Version 2.4. The code is written in the C programming language and uses Win32 for the graphical user interface.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application designed to allow multiple stacks of tiled optical sections obtained from Laser Scanning Microscopy to be integrated into a single volumetric dataset. VIAS allows the user to select the individual image stacks from disk and to adjust their relative position on the screen interactively. By using a global 3D coordinate system, users can manipulate stacks and execute the integration of the data after all the stacks of images have been correctly positioned. VIAS was designed with large datasets in mind. The current version of VIAS is Version 2.4, last updated on January 26, 2009.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which provides the source code for the Rayburst Algorithm. The fully automated algorithm casts rays in a 2D/3D dataset without the use of pre-generated ray tables. It is implemented in ANSI C as a single module. The most current version is Version 1.1, last updated on Aug. 15, 2006.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which allows reconstruction of neuronal structures from confocal and multi-photon images. NeuronStudio provides tools for manual, semi-manual, and automatic tracing of the dendritic arbor, as well as manual and automatic detection and classification of dendritic spines. Advanced 2D and 3D visualization techniques facilitate the verification of the reconstruction, as well as allowing accurate manual editing. The most current version is Version 0.9.92 which was last updated on November 19, 2009.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database that houses human subjects data related to mental health research. Data from 691 subjects are shared in RDoCdb and data from 100,500 subjects are shared in the NIMH Data Archive. Users can plan for data submission, share data, query data, or share their results related to a publication or finding.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 9,2023. Registry that archives curated nanomaterial research data and their biological and environmental implications. The Registry provides data management plans for researchers, and accepts users' public-ready data, archive them, integrate them into the registry, allowing for the data to be shared publicly. Users can request more information on specific nanomaterial records, compare multiple nanomaterials, and export data to their desktop.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.

• Resource
• SciCrunch
• 12 years ago - submitted by Kristen Jensen