Curator Dashboard

A suite of python scripts to perform high-throughput investigation of RNA editing using next-generation sequencing data.

• Resource
• SciCrunch
• 12 years ago - by Anonymous

An alignment-free software tool which uses a computational pipeline based on an improved k-mer scheme and a support vector machine (SVM) algorithm to distinguish lncRNAs from messenger RNAs (mRNAs), in the absence of genomic sequences or annotations. It is especially suitable for PacBio or 454 sequencing data and large-scale transcriptome data.

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• SciCrunch
• 12 years ago - by Anonymous

A computational software tool for estimating linkage disequilibrium (LD) from pooled resequencing data.

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• SciCrunch
• 12 years ago - by Anonymous

Software that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where not all individuals in the pool were genotyped (eALPS-LD).

• Resource
• SciCrunch
• 12 years ago - by Anonymous

Software tool for inferring haplotypes from pooled sequencing. Enables to infer strain numbers and haplotype frequencies in silico from sequences of pooled samples.

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• SciCrunch
• 12 years ago - by Anonymous

Software that implements some population genetics tests and estimators that can be applied to pooled sequences from Next Generation Sequencing experiments.

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• SciCrunch
• 12 years ago - by Anonymous

A perl-based package to perform comparative analysis of metabolic pathways between two organisms.

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• SciCrunch
• 12 years ago - by Anonymous

Software for accurate and sensitive CNV discovery and genotyping in long-range targeted resequencing.

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• SciCrunch
• 12 years ago - by Anonymous

Software that implements a computational model for predicting immunosuppressive domains (ISDs). The software could be used to identify typical ISDs in retroviruses including HERV, HTLV, HIV, STLV, SIV and MLV.

• Resource
• SciCrunch
• 12 years ago - by Anonymous

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• SciCrunch
• 18 years ago - submitted by Andrea Stagg

An intuitive and flexible software tool for building and displaying glycan structures.

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• SciCrunch
• 12 years ago - by Anonymous

A software package for automated recognition of glycans from LC/MS data.

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• SciCrunch
• 12 years ago - by Anonymous

Software for the conversion of data acquired with the FlashQuant (MALDI version of ABSciex 4000) into MS images.

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• SciCrunch
• 12 years ago - by Anonymous

An open source Java application that provides a clear and concise analysis workbench for large amounts of cell motion data.

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• SciCrunch
• 12 years ago - by Anonymous

An adaptive imaging cytometry software environment.

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• SciCrunch
• 12 years ago - by Anonymous

Software that annotates biologically functional gene fusion candidates.

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• SciCrunch
• 12 years ago - by Anonymous

A web application creating Venn diagrams from two or three gene lists.

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• SciCrunch
• 12 years ago - by Anonymous

Software for a low frequency Virus Variant detection pipeline for Illumina data.

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• SciCrunch
• 12 years ago - by Anonymous

Software tool to pick out ion signals that discriminate two groups of samples (e.g. diseased/healthy, resistant/susceptible) by quasi-datapoint-wise comparison using univariate statistic procedures.

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• SciCrunch
• 12 years ago - by Anonymous

A user-friendly software tool to estimate allele-specific gene expression.

• Resource
• SciCrunch
• 12 years ago - by Anonymous