Curator Dashboard

Software used with Illumina sequencing instruments to control PC acivity and perform base call and quality scoring. The primary analysis is performed during the chemistry and imaging cycles of a sequencing run, giving users the option to view data and decide how to proceed in the run.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1, 2023. Software designed to take single or multi-wavelength intracellular ion measurements an provide simultaneous display of the raw data, ratio image, graphs of intensities, ratios, ion concentrations, and a non-ratiometric image for microscope techniques such as a brightfield or phase-contrast image. Two different ratiometric indicators can be imaged and measured simultaneously to provide greater insight to ion exchange and intracellular function regardless of dye loading concentrations, conditions, or emission intensities.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software for Bio-Plex systems which automates data optimization, operates Bio-Plex instruments, and analyzes data.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 11 years ago - by Anonymous

Software for professional vector graphics and rich photo-editing tool. Used for digital drawing.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Core facility that provides the following services: Immunostaining (frozen and paraffin embedded tissues), Image processing. The function of the Confocal Core is to provide services in confocal microscopy, light microscopy and immunostaining for cells and tissues including: * Confocal microscopy * Brightfield and fluorescence microscopy * Immunoperoxidase and immunofluorescence staining Equipment in the facility includes: * Zeiss LSM510 Upright Confocal System * Zeiss LSM 510 Inverted Live-cell Confocal System * Zeiss Axioimager M1 Epifluorescence and Brightfield microscope * Dell workstation with Volocity and LSM510 software # First time users schedule an initial meeting of the P.I., future users and core staff. During this meeting, the project and experimental details will be discussed. Core staff could suggest which microscopy modality works best for the project as well as consultation on strategies to accomplish the imaging task. Users have the option of choosing service work or independent use. # Schedule a service work session or a customized microscope training session with one of the core staff members.

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• SciCrunch
• 11 years ago - submitted by Yueling Li

Software that allows users to manually or automatically design custom primers and probes for gene quantitation and allelic discrimination (SNP) real-time PCR applications. It supports assays based on TaqMan and SYBR Green I dye chemistries.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje

A development environment for engineers and scientists to visualize, create, and code engineering systems. The system design software is integrated with all measurement hardware and contains signal processing IP. Other features include multithreaded execution, software deployment to hardware, and program integration into a single environment.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje

Organization which manufactures bacteria for research and clinical investigations. List Biological Laboratories cultivates native and recombinant microorganisms and purifies, formulates, and lyopholizes enzyme products, virulence factors, and microbial cell wall components. Products include antibodies, microbial toxins, peptides, and virulence factors. Services include live biotherapeutics for clinical trials, contracting research capabilities, GMP regulatory support, lyopholization services and support, and toxin compliance.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A nanoparticle research collaborative which engineers nanoparticle products in order to find cures for cancer and other diseases. The gold labels produced are uncharged molecules which are cross-linked to specific sites on biomolecules. Labels can be attached to any molecule with a reactive group (proteins, peptides, oligonucleotides, small molecules and lipids) for detection and localization. New probes can be engineered based on any fragment of a naturally occurring biomolecule, and the label can be positioned away from the binding site so it does not interfere with binding.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A software package and server used to identify and characterize proteins from primary sequence databases using mass spectrometry data. Mascot integrates peptide mass fingerprinting, sequence querying, and MS/MS ion searching in order to search for proteins in databases like SwissProt, NCBInr, EMBL EST divisions, contaminants, and cRAP. If a license is purchased, users may: search data sets that exceed the 1200 spectrum limit of the free version; set up automated, high throughput work; add and edit proteins and quantification methods; and search a preferred collection of sequence databases. The software package works with instruments from AB Sciex, Agilent, Bruker, Jeol, Shimadzu, Thermo Scientific, and Waters.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Visualize and validate complex MS/MS proteomics experiments

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje

Software used to design, clone, and validate genetic sequences de novo. Users can remove or add sequence motifs, recode open reading frames, design oligonucleotides for sequencing primers, and more. Once the gene is designed, users can order the synthetic DNA fragments with Gene Designer files. Sequences can be imported and exported in GeneDesigner, Genbank, and FASTA formats. Demos and support are available on the main site.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje

Reagent kit for enlargement of gold nanoparticles for electron or light microscopy

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• SciCrunch
• 11 years ago - by Anonymous

Neuroanatomical tracer consisting of B-subunit with attached gold nanoparticles.

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• SciCrunch
• 11 years ago - by Anonymous

Electronic notebook and recordkeeping software.

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• SciCrunch
• 11 years ago - by Anonymous

Version release including Photoshop, Illustrator, InDesign, Media Encoder, and Bridge.

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• SciCrunch
• 11 years ago - by Anonymous

Software used to analyze cellular image data obtained from BD Pathway bioimaging systems. Its features include object splitting for small spots or objects, band segmentation outputs, image preprocessing, and segmentation filters.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A dataset of brain region connectivity statements mined from neuroscientific literature. Users can search for brain regions and explore region connectivity.

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• SciCrunch
• 11 years ago - submitted by Tom Gillespie

Image capture software which creates publication quality images. SPOT allows users to view the live image and a preview of the captured image side by side, enabling image editing before capture. Enhancements such as calibration marks and measurements can be applied after image capture. An advanced version is also available.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje