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Flowing Software is a Free flow cytometry data analysis software.

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• SciCrunch
• 9 years ago - submitted by Maria del Mar Ortega-villaizan

Collection of resting state fMRI (R-fMRI) datasets from sites around world. It demonstrates open sharing of R-fMRI data and aims to emphasize aggregation and sharing of well-phenotyped datasets.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

The Adolescent Brain Cognitive Development (ABCD) Study is the largest long-term study of brain development and child health in the United States. The National Institutes of Health (NIH) funded leading researchers in the fields of adolescent development and neuroscience to conduct this ambitious project. The ABCD Research Consortium consists of a Coordinating Center, a Data Analysis and Informatics Center, and 21 research sites across the country (see map), which will invite approximately 10,000 children ages 9-10 to join the study. Researchers will track their biological and behavioral development through adolescence into young adulthood. Using cutting-edge technology, scientists will determine how childhood experiences (such as sports, videogames, social media, unhealthy sleep patterns, and smoking) interact with each other and with a child’s changing biology to affect brain development and social, behavioral, academic, health, and other outcomes. The results of the ABCD Study will provide families; school superintendents, principals, and teachers; health professionals; and policymakers with practical information to promote the health, well-being, and success of children. The ABCD Study, in partnership with the NIMH Data Archive (NDA), is releasing fast-track data containing unprocessed neuroimaging data from ABCD Study participants to date, as well as basic participant demographics (age, sex), including: High-resolution structural data (3D T1 - and T2 - weighted scans) Advanced diffusion MRI (multiple b-values and directions) Resting State fMRI Task fMRI (Monetary Incentive Delay, Stop-Signal, and Emotional N-Back), along with raw E-Prime task files for each fMRI run Neuroimaging data are collected using a harmonized Human Connectome protocol, developed for the ABCD Study, and supported across all three major MRI scanner platforms (Siemens, General Electric, and Philips). Fast track data are in DICOM format as provided by the MRI scanners and have not undergone quality control or curation. As such, these data are most suitable for technical methods development, as the DICOM images would require pre-processing (e.g., distortion correction, movement correction, alignment) to be suitable for data analysis. The ABCD Study is designed to include a diverse population that reflects the demographics of the U.S., however these interim data may not capture that diversity as enrollment is not yet complete. Fast-track data will be released monthly.

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• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

Web portal that allows free access to supercomputing resources for large scale modeling and data processing. Portal facilitates access and use of National Science Foundation (NSF) High Performance Computing (HPC) resources by neuroscientists.

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• NIF
• 9 years ago - submitted by Matt Travers

Software/algorithm

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• SciCrunch
• 9 years ago - by Anonymous

The ICR mouse is a strain of albino mice originating in Switzerland and selected by Dr. Hauschka to create a fertile mouse line.

• SciCrunch
• 9 years ago - submitted by Shutaro Katsurabayashi

Database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification.

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• RRID-Legacy
• 9 years ago - by Anonymous

Database of disease genes and risk factors and of host pathogen/interactomes. Lists genes, pathways and environmental risk factors positively associated with diseases and conditions such as Alzheimer's disease, schizophrenia, multiple sclerosis, childhood obesity, anorexia nervosa, HIV-1/AIDS, and helicobacter pylori. Details of polymorphisms as well as negative/positive association data can be found via Useful links. Throughout the site are links to Entrez Gene and Pubmed.

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• RRID-Legacy
• 9 years ago - by Anonymous

software for ChemiDoc Touch Imaging System,Bio-Rad

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• SciCrunch
• 9 years ago - by Anonymous

diabetes portal

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• dkNET
• 9 years ago - submitted by Anita Bandrowski

The NAD/NADH-Glo and NADP/NADPH-Glo Assays are bioluminescent, homogeneous, single-reagent-addition methods to rapidly detect NAD+ and NADH and NADP+ and NADPH levels in cells and enzymatic reactions. Current methods to detect nicotinamide adenine dinucleotides lack sensitivity and reproducibility and require sample manipulation and large numbers of cells for cell-based applications. The assay is easily adapted for inhibitor screening in high-throughput formats. The sensitivity and robustness of the assay chemistry allow fewer cells to be used to detect individual nucleotides directly in multiwell plates or analysis of enzymes with low activity or with low Km values.

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• RRID-Legacy
• 9 years ago - submitted by Peter LoCoco

Software for data analysis and graphing. The program also allows the user to create templates for repetitive tasks and perform batch operations from the user interface without the need for programming., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• SciCrunch
• 9 years ago - submitted by Yueling Li

A package for data-driven validation of neuron and ion channel models using SciUnit

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of valuable NIH-funded data.

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• NIF
• 9 years ago - submitted by Matt Travers

DAPI

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• RRID-Legacy
• 9 years ago - submitted by Roberta Piovesana

live dead Assay

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• RRID-Legacy
• 9 years ago - submitted by Roberta Piovesana

RFP an improved codon adaptation for expression in the A + T rich organisms and extend the fluorescent protein portfolio in staphylococcal research (1). (1) Paprotka K, Giese B, Fraunholz MJ. Codon-improved fluorescent proteins in investigation of Staphylococcus aureus host pathogen interactions. J Microbiol Methods. 2010 Oct;83(1):82-6.

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• SciCrunch
• 9 years ago - submitted by Juan Carlos Garcia Betancur

Yellow fluorescent protein (YFP) is a genetic mutant of green fluorescent protein (GFP) originally derived from the jellyfish Aequorea victoria. Its excitation peak is 514 nm and its emission peak is 527 nm. Like the parent GFP, YFP is a useful tool in cell and molecular biology thanks to its properties useful for fluorescence microscopy (1). (1) https://en.wikipedia.org/wiki/Yellow_fluorescent_protein.

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• SciCrunch
• 9 years ago - submitted by Juan Carlos Garcia Betancur

NCBI Taxonomy ID: 224308 Inherited blast name: firmicutes Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid) Other names: synonym: Bacillus subtilis subsp. subtilis str. BGSC 1A700 synonym: Bacillus subtilis subsp. subtilis 168 synonym: Bacillus subtilis 168 Lineage( full ) cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis

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• SciCrunch
• 9 years ago - submitted by Juan Carlos Garcia Betancur

NCBI Taxonomy ID: 668369 Inherited blast name: enterobacteria Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid) Other names: synonym: Escherichia coli DH5alpha equivalent name: Escherichia coli strain DH5[alpha] equivalent name: Escherichia coli str. DH5[alpha] Lineage( full ) cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

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• SciCrunch
• 9 years ago - submitted by Juan Carlos Garcia Betancur