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A set of software programs that utilizes dual spaces algorithms for the determination of small and macromolecular crystal structures by single crystal X-ray and neutron diffraction. Libraries, extra files and environment variables are not required for the executables. SHELX is intended to be run on a command prompt but may be called from GUIs such as shelXle, Olex2, Oscail or WinGX, or hkl2map., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 11 years ago - by Anonymous

Crystallographic software which solves structures using algorithms and automated rapid search calculations to perform molecular replacement and experimental phasing methods.

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• SciCrunch
• 11 years ago - by Anonymous

Pointless scores all the possible Laue groups consistent with the crystal class, which is based on cell dimension restraints, by matching potential symmetry equivalent reflections. For chiral systems, the Laue group uniquely implies the point group then checks sets of reflections which may be systematically absent to suggest a possible spacegroup. There is also a check for lattice centering, i.e., a check for whole classes of reflections having essentially zero intensity, including a check for obverse/inverse twinning in rhombohedral systems. Pointless is also capable of converting XDS, Scalepack, SHELX or SAINT formats to MTZ.

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• SciCrunch
• 11 years ago - by Anonymous

Software which processes diffraction data/images and produces an MTZ file of reflection indices with their intensities, standard deviations, and other parameters. The MTZ file is passed onto other programs of the CCP4 program suite for further data reduction. iMosflm processes data from CCD and pixel detectors. It is available for Windows, Mac OSX and Linux platforms. Tutorials are available at the website.

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• SciCrunch
• 11 years ago - by Anonymous

Software used for visualizing and graphing data, image processing, and programming. It is designed for use by scientists and engineers and supports large data sets, evenly spaced data, and various data import formats. The software includes a suite of image processing operations for image filtering, manipulation, and quantification and is completely programmable.

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• SciCrunch
• 11 years ago - by Anonymous

Image processing software used to modify and clarify sample images for FluoView FV1000 range of confocal laser scanning microscopes and Fluoview FV1000MPE multiphoton excitation systems. The software incorporates high-dynamic-range imaging, minimized signal-to-noise ratios, partial stitching with multiarea time-lapse imaging, and channel unmixing. The software also allows users to select specific areas of the whole sample, which can stitched together.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A research tool for clinical and experimental neuroscience, which provides images of human thalamus in the stereotactic planes of the coordinate system based on intercommissural line. Images include histological sagittal sections, sagittal maps, coronal maps, horizontal maps, and MRI images all from the same brain. The website also provides materials and methods section, references to the articles and presentations describing research data (on which the maps are based), and a bibliography on the synaptic relationships of subcortical and cortical afferents with projection and local circuit neurons in the motor thalamus.

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• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

Analytics platform with various sub platforms, each with specific performance capabilities for tasks such as data analysis, data management, data visualization, and data mining procedures.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 4, 2025.Software application for data analysis and graphing. Origin contains a variety of different graph types, including statistical plots, 2D and 3D vector graphs, and counter graphs. More advance version is OriginPro which offers advanced analysis tools and Apps for Peak Fitting, Surface Fitting, Statistics and Signal Processing.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A software application which can analyze basic Western blot data and export them for use in spreadsheet programs. Users can create standardized or custom lab reports and can share them with colleagues. Various versions are available and are more compatible with Odyssey and Pearl families of imaging systems, Aerius, and the C‑DiGit Blot Scanner. Optional software keys are also available. Tutorials and support are available on the website.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Imaging software used to acquire and analyze images from specific Bio-Rad imaging systems. Users can analyze gel or blot features, capture optimized image data, and generate a report of the data. Image Lab software exclusively runs on the Gel Doc EZ imager, Gel Doc XR+ imaging system, ChemiDo MP, ChemiDoc XRS+ imaging systems, Criterion Stain Free imager, and the GS-900calibrated densitometer., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A set of core facilities of Case Western Reserve University School of Medicine which allows users to create and analyze in vivo animal models. The various facilities provide animal care, transgenic models, imaging, irradiation, and phenotyping for research concerning such topics as cancer, metabolic processes, and behavior. In vivo animals provided include mice, zebrafish, and rodents.

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• SciCrunch
• 11 years ago - submitted by Yueling Li

A COMMERCIAL SUPPLIER? of micro-CT scanners which reconstructs and visualizes data in 3D. A variety of reconstruction programs are provided by SkyScan, but all use cone-beam volumetric algorithms with automatic adaptation to particular scanning geometry in a micro-CT scanner. Reconstruction includes different options such as beam-hardening correction, alignment optimization, and ring artifact correction. Reconstructed slices can be saved in BMP, TIFF, JPG, PNG or numerical data format.

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• SciCrunch
• 11 years ago - by Anonymous

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• SciCrunch
• 11 years ago - by Anonymous

Research software used for post-processing of functional MRI, diffusion MRI, spectroscopy, and perfusion MRI data. It is written in Interactive Data Language.

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• SciCrunch
• 11 years ago - by Anonymous

Viking is an open-source web-compliant application that allows connectomics visualization by converting datasets to web-optimized tiles, delivering volume transforms to client devices, and providing groups of users with connectome annotation tools and data simultaneously via conventional internet connections. Viking is an extensible tool for connectomics analysis and is generalizable to histomics applications.

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• SciCrunch
• 11 years ago - submitted by Robert Marc

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• SciCrunch
• 11 years ago - submitted by James Go

The WormGUIDES team is working to connect the developmental history of cells in the embryo with the final working assembly of parts in the nervous system. Our ability to make these connections hinges in part upon our development of new imaging (iSPIM) and image analysis (Starrynite) technologies for live embryos. However, it will also require a more comprehensive understanding of the mature ultrastructure of the nervous system, more than the previously published analyses of the nematode's neuroanatomy currently afford us. We have therefore completed our first draft of an EM-based digital model of the most complex neuroanatomical region in the worm, the adult nerve ring. And we have deployed a novel system to share the model and underlying data on the web, linking each cell to crucial information about its function, gene expression profile, and network of synapses and cell-cell interactions.

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• SciCrunch
• 11 years ago - by Anonymous

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A Javascript library that aims to deliver a starting point for interactive health data visualization. Examples and demos are available on the site. hFigures was built with d3.js and a copy of the library is included in this repository. All rights and license terms apply to the d3.js library accordingly.

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• SciCrunch
• 11 years ago - by Anonymous