Curator Dashboard

Software tool to address challenges faced by existing methods in providing intuitive explanations for black-box models. Offers unified global and local feature importance by deriving approximate inverse operators for black-box models.

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• RRID
• 1 year ago - submitted by Takafumi Nakanishi

Software application to provide well defined metadata instances for selected schemas of the openMINDS metadata framework.

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• 1 year ago - submitted by Lyuba Zehl

Software segmentation/resquiggling tool for ONT signals. Dynamic programming approach to segment ONT signals.

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• 1 year ago - submitted by Jannes Spangenberg

The Tissue Properties database provides comprehensive estimates for tissue material parameter values and also statistical information about the spread and standard deviation per tissue for the different thermal and fluidic parameters. This information is important for assessment of the contribution to the uncertainty in a quantity of interest due to the selection of the material parameters in simulations. For some material parameters, e.g., perfusion, the variation can be large, which in turn can have a severe effect on simulation results.

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• dkNET
• 1 year ago - submitted by Maryann Martone

Olympus BX41 is clinical and research grade microscope. Can be customized. Offered as pre-configured with your choice of viewing head - binocular, ergo binocular, or trinocular. This has Plan N 4x, 10x, 40x, 100x oil objectives but others can be provided if needed. Comes with XY mechanical stage with slide holder and focusable condenser.

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• 1 year ago - submitted by Hannah Lichtenstein

A model algorithm that integrates omics data and network data to predict essential genes.

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• 1 year ago - submitted by haimei wen

Cardiovascular Biorepository for Type 1 Diabetes Program (CaRe-T1D) to fill a major void of knowledge that exists related to cardiovascular disease in type 1 diabetes.

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• 1 year ago - submitted by Mason Pairish

Exeter Archival Diabetes Biobank (EADB), formerly the Alan Foulis collection. The collection is managed by the University of Exeter Medical School, with images from the biobank made accessible via Pancreatlas. Collection of pancreatic tissues, largely from children who died shortly after a type 1 diabetes (T1D) diagnosis. Provides high-quality digital images of historical, formalin-fixed, paraffin-embedded samples.

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• RRID
• 1 year ago - submitted by Mason Pairish

Core provides optical microscopy and histology services.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Provides bioinformatics expertise and analysis for high throughput data. Services include analysis, visualization, interpretation, and management of big data while also offering custom solutions. Offers collaborative environment by hosting workshops, working groups, and seminars, and improve existing tools and/or invent new tools and algorithms.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Provides services involving cultivation of mammalian and insect cells, including genetically modified organisms (GMOs). This laboratory is accredited by CTNBio (Brazilian National Technical Council of Biosafety), and its research activities are monitored by CIBio - IQ (Internal Commission of Biosafety).

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Light microscopy research resource facility offers confocal, extended and super resolution, and lightsheet imaging options, as well as assistance and training for researchers. The FAIM also has educational resources available for light microscopy basics, and image processing and analysis.

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• RRID
• 1 year ago - submitted by Emery Ng

Core to enhance research capacity for high containment pathogens and strengthen epidemic and pandemic emergency preparedness capabilities. Offers infrastructure, technical support, training, and regulatory compliant environment to investigators.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Software R package to select features with high correlation with the target and little correlation with other variables. It does not use the classical Pearson or Spearman correlations, but metric called Symmetrical Uncertainty.

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• 1 year ago - by Anonymous

Microscope for scanning cell and tissue cultures. System features fluorescence axis for ultra brilliant fluorescence imaging.Internal filter wheel with motorized excitation manager and FIM (Fluorescence Intensity Manager) enables excitation of fluorochromes in less than 20 milliseconds.

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• RRID
• 1 year ago - by Anonymous

PCR system with three different PCR protocols that can be run simultaneously in three different sample blocks.

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• RRID
• 1 year ago - by Anonymous

Core offers high-dimensional spectral cytometry, conventional flow cytometry, nano cytometry, imaging cytometry, spatial biology, and multi-omics (proteomics and transcriptomics). Provides Cytek Aurora spectral cytometers with up to 64-colour capability, CytoFLEX LX for multiparameter conventional cytometry, and CytoFLEX nano for ultra-sensitive detection of viruses, extracellular vesicles, and submicron particles,FlowCam 8400 imaging system for real-time visualisation and analysis of plankton, microbial communities, and other aquatic particulates.Other instruments include Amnis ImageStreamX MKII, MACSima Imaging Cytomics System.Provides services from immunotherapy development, precision oncology, and regenerative medicine to environmental monitoring, plant sciences, and nanoparticle characterisation. All services are underpinned by advanced AI-driven analytics, leveraging R, Python, TensorFlow, and PyTorch on high-performance computing platforms to integrate and interpret complex datasets.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Software R package for multi-scale clustering to perform single-cell transcriptome clustering.

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• 1 year ago - by Anonymous

Non-contact profile, roughness, and film thickness measurements, nanometer resolution, material and shape independent with fully automatic measurement and analysis 3D laser scanning microscope.

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• 1 year ago - by Anonymous

Electron microscopy facility specialising in cell biological electron microscopy for basic and medical research applications.

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• 1 year ago - submitted by Jemima Burden