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Bioimaging analysis software used to acquire quantitative and qualitative data from various types of biological samples. The software provides a variety of image modification features, including contrast optimizing, image printing, 1-dimensional densitometry, fragment length and molecular weight determination, and 2-D densitometry.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Audio recording and editing software. ProTools LE software allows sound mixing, batch fades, and other audio mixing techniques.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Sound analysis software used to process and analyze animal acoustic communications. Its features include digital filtering, real-time spectrogram display, and advanced metadata management. Avisoft SASLabPro is designed to accommodate large numbers of sound files and includes organizational features, including labeling options for single point data and time section labels.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software for acquisition and analysis of flow cytometry data. FloMax data analysis works with data from flow cytometers that support the flow cytometry file standard (FCS). FloMax operates on computers with Windows 95, 98, and 2000., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A multi-channel triggering hard-disk recording system designed specifically for bio-acoustics, although it can be used for other audio signals. This software uses real-time spectrographic and spectrum display and posesses a customizable metadata input tool for embedding user-defined data directly into the resulting .wav files. The maximum sampling rate for real-time display and streaming to disk depends on the type of acquisition board and computer performance. These embedded records can later be accessed from SASLab Pro and integrated into another metadata base.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used to control and calibrate the Palm Robo Microbeam microscope according to user specified parameters. Processes such as system calibrations and correct laser settings are fully automated.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used to create phylogenetic trees through neighbor-joining, parsimony, maximum likelihood methods and bootstrap confidence tests. Specific taxonomic species groups as well as conserved regions can be defined using a mouse standard and then stored into sequence files. Reconstructed trees can be drawn, edited, printed, stored and evaluated according to numerous criteria.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Automated scanning software used in conjunction with the Leica DM6000B microscope to obtain whole-slide image mosaics of histological slides. When performing a scan, Turboscan or the standard scan may be used.

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• RRID-Legacy
• 11 years ago - by Anonymous

A microscopic image capturing software that is meant to be used in conjunction with Q-imaging cameras. Image workflow is managed using a multiple document interface (MDI). There is also a publish image feature to capture high quality images of what is on the screen, including the overlay, the region of interest, and capture of single frames in time lapses or movies.

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• RRID-Legacy
• 11 years ago - by Anonymous

A 3D analysis software for scientific and industrial data. Avizo is used for image data processing, exploration, and analysis. This software is designed to mainly be used commercially in industries including but not limited to: material sciences, life sciences, geo-sciences, and engineering.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Image analysis software designed to process, measure, and analyze images on a personal computer. It is used with either an Olympus brand microscope or an Olympus brand digital camera. The AnalySiS FIVE software can be used to directly control an Olympus brand microscope or camera, take measurements, store results, and analyze the resulting images up to the particle level.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A video-based system to detect animal movement in fear conditioning experiments, as well as movements in learned helplessness experiments. FreezeFrame can detect animal movements (as small as 1mm) and actions, including grooming, sniffing, turning, and rearing. It can also collect and process data for learned helplessness experiments, such as Tail Suspension and the Porsolt Forced Swim Test. This software can monitor animals for up to 15 times per second.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Affinity purified rabbit polyclonal antibody to mCherry, concentrated to 1mg/mL in PBS, 50% glycerol and 5mM sodium azide.

• SciCrunch
• 11 years ago - submitted by Gerry Shaw

A MATLAB toolbox for processing the functional areas of the brain using multi-modal fMRI data for pre-surgical mapping. It is composed of three types of individual-level ICA analyses for user use. Traditional ICA (task) can be used for task fMRI. Either Traditional ICA (rest) or ICA with DICI (rest) can be used for rs-fMRI. Traditional ICA (rest) is designed for users who already have a hypothesis of the pattern of the target component and want to have manually set components by themselves. ICA with DICI (rest) is completely automatic, given that the user provides a template (provided). The software utilizes an automatic component identification method that is based on the discriminatory-index. All the components from multiple ICA runs with multiple component settings are ranked and compiled.

• RRID-Legacy
• 11 years ago - submitted by David Kennedy

Statistical software for visualization, analysis and interpretation of MALDI imaging data. Its features are tailored to mining MALDI imaging data and include univariate analysis, unsupervised and supervised multivariate analysis, and preprocessing of data. Tutorials, software trainings, and example data sets can be accessed from the website.

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• RRID-Legacy
• 11 years ago - submitted by Maryann Martone

Imaging software for monochrome and color image acquisition and processing. It is fully integrated with Olympus microscopes, as well as third party stages and other devices, and supports various CCD and video cameras and TWAIN devices.

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• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

Software tool as a digital virtual microscope for viewing and moving scanned histological slides and for making annotations and measurements on them. Used in digital pathology. Helps to simplify the areas of the pathology workflow where imaging, slide digitization, storage, archivation, visualization and analysis are performed.

• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

Digital microscopy software for research microscopy. It comes standard with drivers to control numerous instruments in and around the microscope. When online, data is acquired in a native-3D format over time, color and specimen locations in customizable experiment protocols. Data can be analyzed by a wide variety of tools for image processing including mathematical operations, statistics functions, analysis scripting and import to/export from MATLAB. Additional modules are available for special applications ranging from deconvolution to photomanipulation to multiphoton.

• RRID-Legacy
• 11 years ago - submitted by Gabrielle Pine

Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software.

• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics.

• RRID-Legacy
• 11 years ago - submitted by Gabrielle Pine