Curator Dashboard

Stereotactic atlases with probabilistic values describing the location of the main cerebral arteries. The data collected are from the COBRA study as described in "COBRA: A prospective multimodal imaging study of dopamine, brain structure and function, and cognition" by Nevalainen et al.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application search tool intended to help users find MRI data shared publicly on the Web, particularly from projects organized under the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI). Users can perform queries visually to select a cohort of participants with brain imaging data based on their demographics and phenotypic information and then link out to imaging measures.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application which allows users to visualise and collaboratively segment and annotate any brain MRI dataset available online via URL. A list of brains are available for use on the main site. Segmentations are automatically saved and can be downloaded as Nifti files or triangular meshes. Users can point BrainBox to their own Nifti data, or try data catalogues created by the community.

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• NIF
• 10 years ago - submitted by Matt Travers

Web framework for collaborative applications for neuroimaging. It hosts various web applications for curation, editing, and analysis in conjunction with neuroimaging data available publicly online.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application used to visualise and annotate collaboratively high resolution histology data. In short, it uses public ontologies to create collaborative, community-curated atlases. Annotations are vectorial, and users can use boolean operations to combine, subtract and split regions.

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• NIF
• 10 years ago - submitted by Matt Travers

A portal for dataset discovery across a heterogeneous, distributed group of transcriptomics, genomics, proteomics and metabolomics data resources. These resources span eight repositories in three continents and six organisations, including both open and controlled access data resources.

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• SciCrunch
• 10 years ago - submitted by Yueling Li

A software add-on that builds upon GENESIS by adding a library to installed versions of GENESIS. It is useful for simulations that must be run many times independently and for large-scale network models.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Commercial software company that offers simulation technology for both simulation and PCB design. PSpice has integrated analog and event-driven digital circuit simulation and a focus on bringing the tools needed for simulation that will help bring customer products to market. The website contains resources, libraries, and a user forum to support use of PSpice technology.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Block diagram environment that contains a graphical editor, customizable block libraries, and solvers for multidomain simulation and model-based design in MATLAB. It supports simulation, automatic code generation, and continuous test and verification of embedded systems.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Analog circuit analyzer and approximator used as a pre-processor to find design formulas or as a post-processor to approximate design formulas. The program performs the .AC analysis in SPICE symbolically with optional numeric evaluation and user selected threshold approximation.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

A software toolbox containing a symbolic linear circuit analysis program. It is a MATLAB application that helps set up and solve design equations of electronic circuits.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Software toolbox for deriving and solving circuit equations symbolically in MATLAB.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

A webserver for the prediction of prokaryote promoter elements and regulons. DNA in FASTA or plain format serve as input. A gene table can be included with the run.

• RRID-Legacy
• 10 years ago - submitted by Ivan Erill

The ECM 830 is a Square Wave Pulse generator designed for in vitro and in vivo applications. The versatility of the ECM 830 applications for gene, drug and protein delivery include; mammalian cells, in vivo, ex vivo tissue, zebra fish tissue and embryos, nuclear transfer, embryo manipulation, plant protoplast and basic bacteria and yeast transformations. The ECM 830 can be used in combination with a wide array of BTX specialty electrodes and accessories to enhance your molecular and drug delivery experiments.

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• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

The Nucleofector™ Device is the single cuvette based system that has been used in research labs since 2001. It allows efficient transfection of hard-to-transfect cell lines and primary cells with different substrates (e.g., DNA vectors or siRNA oligonucleotides) in low-throughput format. The Nucleofector™ II/2b Device can also be used for bacteria transformation by using alternative cuvettes.

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• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

A high resolution confocal microscope.

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• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

Software used to automatically trace single neurons. It supports VTK 3D visualization.

• RRID-Legacy
• 10 years ago - submitted by David Kennedy

MATLAB-based tool for use with NEURON network models. It supports the modeler with model design, organization, execution (including on supercomputers), analysis, and reproducibility.

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• RRID-Legacy
• 10 years ago - by Anonymous

Application that uses molecular sequence data to compute unrooted phylogenetic networks. Given an alignment of sequences, a distance matrix, or a set of trees, the program will compute a phylogenetic tree or network using methods such as split decomposition, neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 10 years ago - by Anonymous

Nucleotide sequence alignment and alignment cleaning based on amino acid information. Users can paste nt-sequences into the application and select the desired protein alignment method and the genetic code, and the option for alignment cleaning., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 10 years ago - by Anonymous