Curator Dashboard

An add-on tool used to export data retrieved with the MC_Rack program. This software is used to convert MC_Rack data files into other file formats.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A data analysis software developed to simplify and record data from fluorescent related assays such as Western Blots, EMSAs, and Western Assays. This software will consolidate all of the resulting data into one easy-to-track image, and thus removes the need for multiple exposures, as well as standardizing the resulting fluorescent bands without image saturation, blowout, or removed sensitivity. Odyssey CLx is capable of scanning multiple mini-blots, microplates, or slides at the same time.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A repository of the results of the efforts of the scientific community in computationally elucidating the structure of the olfactory receptor with a view to establishing a mechanistic basis for OR-odorant binding.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software designed to perform high-speed molecular dynamic simulations of biological systems on conventional commodity clusters, supercomputers and GPUs. This code uses novel parallel algorithms and numerical techniques to achieve high performance and accuracy on platforms with a large number of processors. It can be used with a single computer.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Automation software used to analyze fear behavior in rodents. Freezing is represented in the data file in several different ways, including the total time the subject spends motionless during the session, the percent of time motionless, the number of freezing episodes or occurrences, or as an average index of motion.

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• RRID-Legacy
• 10 years ago - by Anonymous

A database which provides brief introductions of rare diseases. New topics and diseases are added with the help of rare disease medical experts. This is mainly targeted at patients and their families but has useful information for professionals.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An organization which supports those with rare diseases and those researching rare diseases.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A database which contains detailed information rare diseases. The information is produced in collaboration with leading medical specialists and patient associations. New disease descriptions are added continuously and the texts are updated on a regular basis. Both the common names and the technical names for diseases are provided.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 18, 2018; A software which provides unbiased stereological estimates of numbers, lengths, areas, and volumes present in images that were captured by microscopes or virtual slides. This software is intended to estimate structural information in a 3D format from 2D tissue sections.<br/>There are other software tools at this company, but they have either changed names or are simply different software tools.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software for volume visualization that can be used by researchers to explore and analyze medical and scientific data. This software uses a variety of tools to load and visualize the data on either a 2D or 3D display. Theses tools include volume rendering, maximum intensity projections and oblique reformatting. Visualizations can be saved mid-session and be reopened at a later time.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software R package used for simplifying and analyzing Cufflink RNA-Seq output. This program takes various output files from a cuffdiff run and creates a SQLite database of the results that will describe the appropriate relationships between the genes, transcripts, transcription start sites and CDS regions.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software used to process stacks of digital images. All of the resulting images are processed to have the same dimensions and then are consolidated into a single image.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software that is used to analyze image stacks of biofilms that were recorded by confocal microscopes. While this program does not have any statistical calculation methods, it can extract a number of quantitative parameters from the images. This software was initially developed by Arne Heydorn and Bjarne Ersboll as a MatLab script until it was expanded into an independent software in 2008.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software package created to perform molecular dynamics. Molecular dynamics package mainly designed for simulations of proteins, lipids, and nucleic acids. Can also be used for research on non-biological systems, such as polymers.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A highly versatile software package for performing and analyzing scientific Molecular Dynamics many-particle simulations of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology. It can be used to simulate systems such as polymers, liquid crystals, colloids, ferrofluids and biological systems like DNA and lipid membranes.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An Artificial Selected Peptides Database which contains sequences of peptides and proteins retrieved by in vitro directed evolution, mainly phage display technique, along with results of pairwise correlation analysis carried out with CRASP system.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An online tool for managing and viewing datasets. Data can be viewed in 2D or 3D with activation points as points clouds or projections on the cortex surface. Data can be imported as a NIfTI file or a list of activation peaks and results can be exported as a PDF file.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A structural folding computational tool. The method is based on the assembly of supersecondary structural fragments taken from highly resolved protein structures using a simulated annealing algorithm.

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• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski