Curator Dashboard

A national germplasm database where users can donate or request germplasms from a variety of non-human animals, including fish, invertebrates, bison, elk, pig, turkey, and yak. Germ plasm types include white blood cells, embryo, heart, larvae, liver, muscle, oocyte, ovarian tissue, DNA, red blood cells, semen, skin, sperm, spleen, testicular tissue, and blood.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An interactome of protein-protein interactions related to schizophrenia, it contains novel PPIs predicted with the HiPPIP model. Schizophrenia associated genes are gathered from GWAS genes, historical candidates, and OMIM. Members of the scientific community can also suggest genes to add to the interactome.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Gel analysis software which can be used on a PC with TWAIN-compatible scanners without specialty equipment. Users scan or load an image which can then be calibrated. SigmaGel allows users to make lane measurements, spot measurements, and molecular weight measurements. After data analysis was completed, users can print or copy and paste data and images.

• RRID-Legacy
• 10 years ago - submitted by Edith Gonzalez

Software tool for transcriptome assembly and differential expression analysis for RNA-Seq. Includes script called cuffmerge that can be used to merge together several Cufflinks assemblies. It also handles running Cuffcompare as well as automatically filtering a number of transfrags that are likely to be artifacts. If the researcher has a reference GTF file, the researcher can provide it to the script to more effectively merge novel isoforms and maximize overall assembly quality.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software used to control and operate the Applied Biosystems 7500 Real-Time PCR system.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A statistical software which can be used for basic statistics, experimental design, sample size calculations, and analysis of linear mixed models, time series, and spatial analysis.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A a configurable software package for peptide and protein mass spectrometry analyses. It includes the SEQUEST search algorithm to identify separate proteins in complex mixtures, interactive navigation tools to filter and sort protein summaries, customized spectral plots, and chromatograms using the PEPMATCH and PEPMAP tools. This software also has batch processing capabilities to improve throughput by queuing up several files, and custom-build proprietary databases, index databases, and retrieve databases through a public server.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software which acquires and processes data sets, primarily through the Xcalibur system.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 24, 2016. A software which is used with gel electrophoresis analysis and is used with the Ettan DIGE system. This system allows the option of reference to the internal standard for each spot, which ultimately eliminates gel-to-gel variation, and gives quantitation. This gel comparison method introduces nearly zero statistical error.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software which tracks the number of occurrences and duration of up to 16 defined events. The user can group events together so that turning on one event in a group will automatically turn off other active events in the group. Sessions can end after a fixed length of time, or the sessions can be ended manually, At the end of the session, the data can be saved in a comma-delimited file which can be easily imported into a spreadsheet application.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software used to automate the process of presenting stimulus signals and acquiring signal data. The software is designed to work with System 3 hardware and files generated by TDT's signal design software SigGenRP.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A programming library that uses standard graphics cards to produce 2D and 3D visual stimuli for vision research experiments.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. A software which collects, displays, and analyzes chromatographic signals. This software doesn't require any programming, and collects signals from one or two detectors. PowerChrom is supplied as part of the PowerChrom system, or separately for use with e-corder recording systems.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVCE, documented January 19, 2022. Software used to control the Zeiss Axioskop microscope.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software tool which deletes non-brain tissue from image of the whole head and estimates both internal and external skull surfaces.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software which is used to control the LAS-1000plus luminescent image analyzer. This software adjusts the focus, exposure time, sensitivity, and cooling temperature, and will record the data after the sample is scanned.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software which predicts R-loop Forming Sequences (RLFSs) in nucleic acid sequences based on the experimentally supported structural models of RLFSs. The tool identifies and visualizes RLFS coordinates from natural or artificial DNA or RNA input sequences and creates standard-compliant output files for later annotation and analysis.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Quality control software that perform checks on raw sequence data coming from high throughput sequencing pipelines. This software also provides a modular set of analyses which can give a quick impression of the quality of the data prior to further analysis.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software which is used to acquire physiological data from the HEKA Patch Clamp Amplifiers and HEKA interfaces.

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• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen