Curator Dashboard

Package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML estimates parameters and tests hypotheses to study the evolutionary process from a phylogenetic tree., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software which creates phylogenetic trees from molecular, morphological and/or behavioral data through high speed computer analysis.

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• RRID-Legacy
• 10 years ago - by Anonymous

Open data repository fully dedicated to MEG data in raw and processed form. The archive also contains anatomical MRI volumes and demographic and questionnaire information. Organized and stored as the Brain Imaging Data Structure (BIDS) with the integration of multimodal electrophysiology data. Directly readable by data-analysis software with Brainstorm. OMEGA will continue to expand, with contributions from the scientific community.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Association whose goal is to foster the spread of accurate scientific information.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Commercial organization which offers a catalog of building blocks, reagents, catalysts, reference materials, and research chemicals for various applications. Analytical services and laboratory services are also provided.

• dkNET
• 10 years ago - submitted by Tylor Keller

Partnership between the National Institutes of Health (NIH), the U.S. Food and Drug Administration (FDA), and multiple biopharmaceutical companies and non-profit organizations whose goal is to increase the number of new diagnostics and therapies for patients and reduce the time and cost of developing them. The group explores three major areas of disease: diabetes, Alzheimer's disease, and rheumatoid arthritis and lupus.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site.

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• NIF
• 10 years ago - submitted by Matt Travers

Commercial reagent supplier which offers chemical compounds and other reagents for researchers.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Database of Xenopus gene expression patterns, queryable by specific location or region in the embryo. Each entry includes information such as images, species, and gene name.

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• SciCrunch
• 10 years ago - by Anonymous

Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns.

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• RRID-Legacy
• 10 years ago - by Anonymous

Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software available from brainmap.org to perform meta-analyses via the activation likelihood estimation (ALE) method. It also includes the transforms for icbm2tal conversions.

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• NIF
• 10 years ago - submitted by Maryann Martone

Software toolbox that is used to convert, analyze, or store data from molecular modeling, chemistry, biochemistry and other related areas. This software is used to read, write, and convert into over 110 chemical file formats.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Computational chemistry related-software used for the computation management, analysis and visualisation of chemical information of any defined type. This software uses a worldwide network of databases with property descriptions, computational modules, data analysis tools, visualization servers, data type handlers and I/O modules to increase the software�s capacity extensibility.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Heuristic algorithm used to generate plausible metabolic maps from a comprehensive library of biotransformations and abiotic reactions, and prioritizes the transformations based on estimated system-specific probabilities occurrence of the transformations. The reliability of generated pathways, metabolites and maps can be assessed according to the extent that they have been supported by observed metabolic data.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software used to automate the process of accessing, analyzing and reporting scientific data. This software can be used by a person with little or no software development experience can create scientific protocols that can be executed through a variety of interfaces including: BIOVIA Web Port, other BIOVIA solutions such as BIOVIA Electronic Lab Notebook, Isentris, Chemical Registration and third-party applications such as Microsoft SharePoint. The protocols aggregate and provide immediate access to volumes of research data, they automate the scientific analysis of data and allow researchers to explore, visualize and report results.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software program to predict metabolic and degradation products of chemicals. METAPC has dictionaries on mammalian metabolism, aerobic microbial degredation, anerobic microbial degredation, and photo degredation.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software which predicts metabolic transformations related to cytochrome and flavin-containing monooxygenase mediated reactions in phase I metabolism. MetaSite uses both enzyme-substrate recognition and the chemical transformations induced by the enzyme. MetaSite provides the structure of the metabolites formed with rankings derived from the site of metabolism predictions. This software is not training set dependent, and can predict �hot spots� as well as suggest the regions that contribute most towards each one.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Open source downloadable application which contains a framework for managing and analyzing chemical compounds, as well as supports editing in 2D, processing large collections of molecules in tables, calculate various types of properties, and more cheminformatics functionality. This software also is used for the management and analysis of biological sequences (DNA, RNA, and protein), and relates the chemical structures and a target and then describes them using mathematical descriptors and models them using statistical methods. Bioclipse is equipped with a scripting language (Bioclipse Scripting Language or BSL) which can be used to automate tasks or create reusable snippets that can be shared with others,

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software design tool in retro-metabolic drug design that considers a variety of conepts such as prodrugs, soft drugs, and chemical drug-delivery systems. RetroMex predicts the structure of the retro-metabolites, collects them in compound databases, and presents the results in tree format.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen