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Showing 20 out of 28,845 Resources on page 717

BrainVoyager

A neuroimaging software package for data management and analysis.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Ir-tweak

Interactive software application used for manual image registration (e.g., aligning, scaling, warping) of ssLM and ssTEM images. Users place control points in one image, and these points' locations are predicted on a moving or warped second image. Transform parameters are updated once the user adjusts and corrects the predicted points on the second image.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Teaching Commons

A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Truncation Thresholds Software

Software used to compute truncation thresholds, pair of spike detection thresholds that are used for separating extracellular neural recordings into two segments consisting of signal and noise, using truncated probability distributions.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Test resource submission

A test resource submission

  • Resource
  • NIF
  • 10 years ago - submitted by James Go

StatPlus Mac

A statistical data analysis tool that works with Microsoft Excel and is designed especially for use in IOS systems. Tutorials and examples are provided within the program.


NIH Metabolomics program

A US national program which supoorts the development of technologies in order to enhance the metabolomics field. It specifically increases the national metabolomics research capacity by supporting five core programs: Training in Metabolomics, Metabolomics Technology Development, Metabolomics Reference Standard Synthesis, Metabolomics Data Sharing and International Collaboration, and Comprehensive Metabolomics Resource Cores.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Metabolomics Workbench Metabolite Database

A database which contains structures and annotations of biologically relevant metabolites from public repositories such as LIPID MAPS, ChEBI, HMDB, PubChem, and KEGG. Users can search for molecular structure based on substructure, text, or mass.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

IUPRED

A web server which recognizes tertiary structures from an amino acid sequence based on estimated pairwise energy content. Users can input SWISS-PROT/TrEMBL identifier or accession number, or paste the amino acid sequence.


FATCAT

Web server for flexible protein structure comparison. Structure alignment is formulated as the aligned fragment pairs chaining process allowing at most t twists, and the flexible structure alignment is transformed into a rigid structure alignment when t is forced to be 0., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.


Composition Profiler

Web tool for discovery and visualization of differences in amino acid composition. Two samples of amino acid sequences serve as input and a bar chart composed of twenty data points is output.


PhyML

Web phylogeny server based on the maximum-likelihood principle.


ProtTest

Web-based software used for the selection of best-fit models of protein evolution., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.


I-TASSER

Web server as integrated platform for automated protein structure and function prediction. Used for protein 3D structure prediction. Resource for automated protein structure prediction and structure-based function annotation.


clValid

An R package which contains functions for validating the results of a clustering analysis.


International Human Epigenome Consortium Data Portal

A data portal of the International Human Epigenome Consortium which provides access to comprehensive data sets of reference epigenomes relevant to health and disease. The IHEC Data Portal can be used to view, search and download data already released by different IHEC-associated projects. Data are organized by consortium, by tissue, and by assay category. Users can visualize data sets using the data grid provided or the UCSC Genome Browser.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Ko-Wei Lin

Big Data Bag

Software package with tools which assemble, identify, and provide access to subsets of data in a large and complex data collection workflow. The software utilities work primarily with BagIt packages that conform the BDDS Bagit and BDDS Bagit/RO profiles. JSON-LD is used to provide a standard way for linking metadata with existing ontologies and vocabularies.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

ProtVista

A BioJS viewer for protein sequence features.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Open Targets

A publicprivate initiative that supports research that provides evidence on the biological validity of therapeutic targets and that gain insight into the effectiveness of pharmacological intervention. It aims to provide a research and development framework that applies human disease. It shares its information openly.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen

Metapath

A statistical package for comparing metagenomic data-sets at the pathway level. It relies on a combination of metagenomic sequence data and prior metabolic pathway knowledge, which is pulled from KEGG.

  • Resource
  • SciCrunch
  • 10 years ago - submitted by Kristen Jensen