Curator Dashboard

Collection of open database in functional genomics.

• Organization
• SciCrunch
• 10 years ago - submitted by Yueling Li

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• testjamie
• 10 years ago - submitted by Jamie Li

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• dkNET
• 10 years ago - submitted by Jamie Li

Data analysis tool that utilizes the Comparative CT (ddCT) method to rapidly and accurately quantitate relative gene expression across a large number of genes and samples. Raw input from plates or arrays can be analyzed according to user-determined settings.

• dkNET
• 10 years ago - submitted by Maryann Martone

Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Interoperability framework which supports integrative genomics analysis via access to various bioinformatics tools. Rather than performing analyses itself, GenomeSpace acts as a hub for data from supported bioinformatics tools and reformats data and results when necessary.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Human and mouse genome annotation project which aims to identify all gene features in the human genome using computational analysis, manual annotation, and experimental validation.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Semi-automated and manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and oncology clinical trials. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials.

• Resource
• SciCrunch
• 10 years ago - submitted by Ko-Wei Lin

Database that aggregates exome and genome sequencing data from large-scale sequencing projects. The gnomAD data set contains individuals sequenced using multiple exome capture methods and sequencing chemistries. Raw data from the projects have been reprocessed through the same pipeline, and jointly variant-called to increase consistency across projects.

• Resource
• SciCrunch
• 10 years ago - submitted by Ko-Wei Lin

Software that automatically reads and processes up to 100 raw microarray image files. The software finds and places microarray grids, rejects outlier pixels, accurately determines feature intensities and ratios, flags outlier pixels, and calculates statistical confidences.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Software program that can illustrate the output of SEDFIT and SEDPHAT programs and can perform simple calculations with the data. It is designed to work with sedimentation velocity, sedimentation equilibrium, ITC, DLS, and isotherm data.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Database and project to reveal open reading frames (ORFs) in the yeast genome in order to discover their functions. A PCR-based gene deletion strategy is used to assign functions through phenotypic analysis of mutants.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Central repository that receives, catalogs, preserves, and distributes wild type and mutant cultures of the green alga Chlamydomonas reinhardtii, as well as useful molecular reagents and kits for education and research.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung

Climate-controlled mycological herbarium housing preserved specimens of forest fungi. CFMR scientists and other researchers use the CFMR collections to test hypotheses of distribution, relatedness, and biological activity of forest fungi.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung

Supplier and researcher of wild C. elegans strains. CeNDR supplies organisms, analyzes whole-genome sequences, and facilitates genetic mappings to aid researchers in gene discovery.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Software tool for analyzing cross-linking/mass spectrometry datasets using any bifunctional cross-linker. It can be used to identify cross links of peptides – such as DSS, BS3, Disulfides, and zero-length – in complex mixtures.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Software tool for the analysis of cross-linking/mass spectrometry datasets using MS-cleavable cross-linkers. MeroX is specialized for MS/MS-cleavable cross linking reagents and identifies the specific fragmentation products of the cleavable cross links.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Commercial data acquisition and analysis software that forms a data acquisition system for measuring extracellular activities of excitable cells in vitro and in vivo. It has been developed especially for use with the data acquisition systems from Multi Channel Systems MCS, but the software can also be used with other experimental setups.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Genebank of wild relatives, monogenic mutants and miscellaneous genetic stocks of tomato. TGRC offers seed samples for free to researchers worldwide.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung

Research facility and licensed commercial research animal breeder that specializes in custom polyclonal antibody production, contract research, animal models for research, and animal tissue procurement. Brown Family Enterprises can make and distribute custom polyclonal antibodies using rabbits, goats, sheep, and horses.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung