Curator Dashboard

Software used to simulate tumor progression in various stages of growth in order to study the process' dynamics. The input can be fitness landscape, mutation rate, and cell division time. The output is growth dynamics and other relevant statistics, such as expected tumor detection time and expected appearance time of surviving mutants. The tool is implemented in Java and runs on all operating systems which run a Java Virtual Machine (JVM) of version 1.7 or above.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

Publishing company which provides access to its four journals SYNTHESIS, SYNLETT, SynOpen, and SYNFACTS; their reference works Science of Synthesis and Pharmaceutical Substances; and the paired encyclopedia ROEMPP.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An article repository which archives peer-reviewed papers and non-peer-reviewed preprints in PeerJ. It includes papers and preprints from the biological and medical sciences PeerJ journal and from the computer science PeerJ journal.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An online platform for open source data/datasets created, collected or annotated for scientific research of all fields and disciplines. Registered users can share data relating to their research project and view data from other projects. Groups can combine datasets into collections associated with the group, in contrast to individual members of the group hosting their own data.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Solver for stiff and nonstiff ordinary differential equation (ODE) systems (initial value problem), given in explicit form y' = f(t,y), based on Adams and BDF methods. It is one of the programs that makes up the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Metabolic pathway map that collects metabolic data gathered from multiple public databases and organizes them in one central location.

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• dkNET
• 10 years ago - submitted by Rintaro Saito

Software for magnetic resonance image reconstruction and computed tomography reconstruction. Its main application geared towards rapid prototyping, teaching, forensics, and medicine. Its features include the ability to import DICOM or Analyze files, to export files to the STL, OBJ, and PLY formats, volume rendering, and manual or semiautomatic image segmentation.

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• RRID-Legacy
• 10 years ago - by Anonymous

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• SciCrunch
• 10 years ago - submitted by James Go

Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site.

• RRID-Legacy
• 10 years ago - submitted by David Kennedy

Statistical method that uses previously annotated interaction data to automatically determine biologically informed statistical significance cutoffs for genome-wide screens.

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• RRID-Legacy
• 10 years ago - by Anonymous

A portal and resource for tutorials on a variety of data analysis techniques, the use of tools such as MetaMapR, workshops on data visualization, and R code manuals.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A company that provides data analysis software with features such as multivariate tools, data mining, process modeling and interactive graphics.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A software program that allows users to visualize and interpret human metabolim and expression profiling data by providing users with a bioinformatics framework. Its features include bulding and analyzing networks of genes and compounds, identifying enriched pathways from expression profiling data, and visualizing changes in metabolite data.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 5,2023. Software tool for processing in metabolomics experiments., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An open-source software program for integrating enzymatic transformations with metabolite structural similarity, mass spectral similarity and empirical associations to generate connected metabolic networks and display results using data visualization techniques.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software program for overrepresentation (enrichment) analysis of categorical annotations for a set of compounds. These categorical annotations correspond to biological and chemical information found in public databases and software. Annotations can be biological (pathways, enzyme interactions, pharmacological action) or chemical (taxonomy and chemical groups).

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A software suite for identifying and quanitfying compounds in NMR spectra. Features include a compound profiler, tools to process data, a compound builder, spin simulator and library manager. More information can be requested, and installation instructions are available on the website.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A translation service which contains a registry of pubicly available chemical information such as structures, chemical names, chemical synonyms, database identifiers, molecular masses, XlogP and proton-donor/acceptor data for compound-specific, structure-based cross references. It offers single ID conversion, batch ID conversion, InChI code conversion, and other services.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen