Curator Dashboard

A webserver for the prediction of prokaryote promoter elements and regulons. DNA in FASTA or plain format serve as input. A gene table can be included with the run.

• RRID-Legacy
• 10 years ago - submitted by Ivan Erill

The ECM 830 is a Square Wave Pulse generator designed for in vitro and in vivo applications. The versatility of the ECM 830 applications for gene, drug and protein delivery include; mammalian cells, in vivo, ex vivo tissue, zebra fish tissue and embryos, nuclear transfer, embryo manipulation, plant protoplast and basic bacteria and yeast transformations. The ECM 830 can be used in combination with a wide array of BTX specialty electrodes and accessories to enhance your molecular and drug delivery experiments.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

The Nucleofector™ Device is the single cuvette based system that has been used in research labs since 2001. It allows efficient transfection of hard-to-transfect cell lines and primary cells with different substrates (e.g., DNA vectors or siRNA oligonucleotides) in low-throughput format. The Nucleofector™ II/2b Device can also be used for bacteria transformation by using alternative cuvettes.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

A high resolution confocal microscope.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Qiangqiang Shao

Software used to automatically trace single neurons. It supports VTK 3D visualization.

• RRID-Legacy
• 10 years ago - submitted by David Kennedy

MATLAB-based tool for use with NEURON network models. It supports the modeler with model design, organization, execution (including on supercomputers), analysis, and reproducibility.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Application that uses molecular sequence data to compute unrooted phylogenetic networks. Given an alignment of sequences, a distance matrix, or a set of trees, the program will compute a phylogenetic tree or network using methods such as split decomposition, neighbor-net, consensus network, super networks methods or methods for computing hybridization or simple recombination networks., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Nucleotide sequence alignment and alignment cleaning based on amino acid information. Users can paste nt-sequences into the application and select the desired protein alignment method and the genetic code, and the option for alignment cleaning., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool for the rapid annotation of prokaryotic genomes. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Software tool to automatically improve draft assemblies and find variation among strains, including large event detection. FASTA files of genome along with one or more BAM files of reads aligned as input. Read alignment analysis is used to identify inconsistencies between input genome and evidence in reads, then attempts to make improvements to genome.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

A division of the University of San Francisco that provides infrastructure, services, and training to support clinical and translational research.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

A laboratory that conducts research on improving health care through new and refined approaches to interpreting data. It is under the direction of Professor Roger Mark. LCP research incorporates physiology, computer science, engineering, and applied mathematics. Their approaches include modeling, signal processing, pattern recognition, and machine learning, the lab’s researchers develop and refine methods for analyzing data and for generating predictive models that will aid in patient care.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

Open access repository for Johns Hopkins University researchers to share their research data. Data repository is administered by professional curators at JHU Data Services, who will work with depositors to enable future discovery and reuse of your data, and ensure your data is Findable, Accessible, Interoperable and Reusable (FAIR). Each dataset has citation and DOI, facilitating attribution, and connection to research publications.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

An institute dedicated to using genomics to advance our understanding of the biology and treatment of human disease in order to improve human health.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

A commercial bioinformatics company that uses high-throughput sequencing and expert bioinformatics techniques to profile T-cell and B-cell receptors. They focus on providing immunosequencing platforms to researchers working on cancer and other immune-related diseases in order to translate their work into clinical diagnostics and therapeutic development to improve patient care.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

A public research university in Colchester, Essex, England. The institution has degree programs that span the humanities, social sciences, and health.

• Organization
• SciCrunch
• 10 years ago - submitted by Yueling Li

A database of curated digital data in the social sciences and humanities in the United Kingdom. Their organization manages the UK Data Service, a portal for research resources, as well as curation for other organizations.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

A national research infrastructure that provides bioinformatics support to life science researchers in Sweden. Their work is supported by the Swedish Research Council.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Database of Coherent X-ray Imaging (CXI) experiments. This data is widely accessible to researchers worldwide.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Customizable software program for behavioral testing. Users logically order simple text commands to direct experimental work flow and data collection, providing control of chamber components, stimuli, reinforcement mechanisms, data variables, and arrays. Standard pre-written procedures and custom coding solutions are available for purchase.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous