Curator Dashboard

Tool for modeling and simulating large, complex biological neural networks, particularly pulse-coupled, spiking neural networks. Its main features include modular or hierarchical modeling strategy of networks, phase-coded neurons, event-driven simulation, and integration of standard file formats.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Software which provides an interface for MindWave Mobile hardware, allowing users to view and listen to brainwave output of different "mind states". Users can: view any or all brainwaves, specify a combination of brainwaves via a formula, compare a base line session to a performance session, and create a log and run it through the application to view different graphical outputs. NeuroExperimenter only runs on Windows

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Software Python package for simulation and analysis of neuronal networks using the NEURON simulator.Used to facilitate development, parallel simulation, analysis, and optimization of biological neuronal networks.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Atlas of functional ROI's, including individual networks (auditory network, sensorimotor network, etc.). Atlases of individual networks and combined networks are available for download directly from the website.

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• NIF
• 10 years ago - submitted by Maryann Martone

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website.

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• NIF
• 10 years ago - submitted by Maryann Martone

Neuron education application for smart phones which provides an introduction to neural simulations at a low entry point.

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• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

Database of bacteriophage gene regulation elements, genes, and genomes. Data are collected from scientific papers and cross-referenced with other database resources. The database can be searched using keywords or browsed by phage genome. Sets of regulatory sequences can browsed and exported in various formats.

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• RRID-Legacy
• 10 years ago - submitted by Ivan Erill

An extensible framework for data-driven model parameter optimization that wraps and standardizes several existing open-source tools. BluePyOpt abstracts the optimization and evaluation tasks into various reusable and flexible discrete elements according to established best-practices. It also provides methods for setting up both small- and large-scale optimizations on a variety of platforms.

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• NIF
• 10 years ago - submitted by Matt Travers

Stereotactic atlases with probabilistic values describing the location of the main cerebral arteries. The data collected are from the COBRA study as described in "COBRA: A prospective multimodal imaging study of dopamine, brain structure and function, and cognition" by Nevalainen et al.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application search tool intended to help users find MRI data shared publicly on the Web, particularly from projects organized under the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI). Users can perform queries visually to select a cohort of participants with brain imaging data based on their demographics and phenotypic information and then link out to imaging measures.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application which allows users to visualise and collaboratively segment and annotate any brain MRI dataset available online via URL. A list of brains are available for use on the main site. Segmentations are automatically saved and can be downloaded as Nifti files or triangular meshes. Users can point BrainBox to their own Nifti data, or try data catalogues created by the community.

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• NIF
• 10 years ago - submitted by Matt Travers

Web framework for collaborative applications for neuroimaging. It hosts various web applications for curation, editing, and analysis in conjunction with neuroimaging data available publicly online.

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• NIF
• 10 years ago - submitted by Matt Travers

Web application used to visualise and annotate collaboratively high resolution histology data. In short, it uses public ontologies to create collaborative, community-curated atlases. Annotations are vectorial, and users can use boolean operations to combine, subtract and split regions.

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• NIF
• 10 years ago - submitted by Matt Travers

A portal for dataset discovery across a heterogeneous, distributed group of transcriptomics, genomics, proteomics and metabolomics data resources. These resources span eight repositories in three continents and six organisations, including both open and controlled access data resources.

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• SciCrunch
• 10 years ago - submitted by Yueling Li

A software add-on that builds upon GENESIS by adding a library to installed versions of GENESIS. It is useful for simulations that must be run many times independently and for large-scale network models.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Commercial software company that offers simulation technology for both simulation and PCB design. PSpice has integrated analog and event-driven digital circuit simulation and a focus on bringing the tools needed for simulation that will help bring customer products to market. The website contains resources, libraries, and a user forum to support use of PSpice technology.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Block diagram environment that contains a graphical editor, customizable block libraries, and solvers for multidomain simulation and model-based design in MATLAB. It supports simulation, automatic code generation, and continuous test and verification of embedded systems.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Analog circuit analyzer and approximator used as a pre-processor to find design formulas or as a post-processor to approximate design formulas. The program performs the .AC analysis in SPICE symbolically with optional numeric evaluation and user selected threshold approximation.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

A software toolbox containing a symbolic linear circuit analysis program. It is a MATLAB application that helps set up and solve design equations of electronic circuits.

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• SciCrunch
• 10 years ago - submitted by Jamie Li

Software toolbox for deriving and solving circuit equations symbolically in MATLAB.

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• SciCrunch
• 10 years ago - submitted by Jamie Li