Curator Dashboard

RZ6 processor tool designed for rapid animal screening. It automates the process of presenting stimulus signals and averaging response signal data. It automates the process of presenting stimulus signals and averaging response signal data by giving users control over the stimulus signal parameters used to generate stimuli that vary across successive presentations., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Framework for exploring genetic variation in the context of the genome annotations available for the human genome. Users can load a VCF file into a database and each variant is automatically annotated by comparing it to several genome annotations from source such as ENCODE tracks, UCSC tracks, OMIM, dbSNP, KEGG, and HPRD.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software tool designed for mapping short reads onto a reference genome generated from Illumina, Ion Torrent, and 454 NGS platforms. Its features include paired end alignment, methylation status analysis, automatic base quality calibration, and in built adapter trimming and base quality trimming.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Full featured, excitation and emission, FRET and ratio-imaging software module which allows users to view and change setup parameters as images are being acquired. It is a standard component of ISee Analytical Imaging Software.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Portal specializes in visualizing and disseminating single cell data. Allows you to use natural language and faceted search to discover other scientists’ research and share your own findings. Each study includes information on cell types, singular or multiple gene expression, and spatial transcriptomics. Interactive visualizations allow to explore cell clusters and search for related genes.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Integrated pipeline for tractography-based brain parcellation with automatic processing and massive parallel computing. ATPP offers a CLI version for parcellating multiple brain regions and a GUI version for parcellating a specific brain region. " ATPP completely follows the scientific cultural shift to open science, which aims at making scientific research including journal papers, lab notes, data, and, of course, workflow tools, accessible and transparent to all levels of society. ATPP is publicly accessible in Neuroimaging Informatics Tools and Resources Clearinghouse8 (NITRC) (https://www.nitrc.org/projects/atpp). Its source codes are hosted in GitHub9 (https://github.com/haililihai/ATPP_CLI; https://github.com/haililihai/ATPP_GUI), under the GNU generic purpose license version 310 (GPLv3), and are welcome to download and fork. The Digital Object Identifiers (DOIs) providing a persistent way to make digital data easily and uniquely citable was created from Zenodo11 platform with those GitHub repositories (ATPP CLI v2.0.0, doi: https://doi.org/10.5281/zenodo.239702; ATPP GUI v2.0.0, doi: https://doi.org/10.5281/zenodo.239705). "

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• RRID-Legacy
• 10 years ago - by Anonymous

Graphical user interface that has been implemented as a 3D Slicer plugin (scripted module). It serves to display a corresponding set of cortical regions from functional connectivity matrix in an explorable 3D scene that represents brain anatomical environment. In addition to grey matter regions, MultiXplore automatically finds and extracts deterministic fiber bundles which exist between selected region(s) and adds them to the 3D environment. This feature helps in generating region-based fiber bundles given a desired whole-brain tractography data.

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• NIF
• 10 years ago - submitted by Matt Travers

Software for automated optical tracking for freely moving and head-fixed animals. It provides real-time and post-hoc tracking methods.

• RRID-Legacy
• 10 years ago - submitted by Mostafa Nashaat

A versatile real-time and post-hoc automated optical tracking method for freely moving and head-fixed animals

• RRID-Legacy
• 10 years ago - submitted by Mostafa Nashaat

Database of interactive neural computation computer models at levels ranging from simple linear filters to large-scale networks of spiking units. Interface tools are provided while browsing and exploring models.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Public archive of neural signals recorded from various types of cells and sites in neural systems. Any data can be publicly accessed and downloaded, and users can submit their data.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

In vitro recording system for electrophysiology research with integrated amplifier and stimulus generator, temperature control, and the option for real-time signal detection and feedback. The system can record up to 4 MEAs in parallel at a sampling rate of 50 kHz per channel.

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• SciCrunch
• 10 years ago - by Anonymous

Biotechnology company that develops products for genomics research and molecular diagnostics, such as systems for DNA and protein analysis, DNA and protein fractionation technologies, and other sequencing equipment.

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• RRID-Legacy
• 10 years ago - submitted by Ivan Erill

Commercial provider of equipment and resources for epigenetics research, biological sample preparation, and diagnostic assays. The products Diagenode provides include automation and semi-automation software, antibodies, reagents, kits, and shearing technologies.

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• RRID-Legacy
• 10 years ago - submitted by Ivan Erill

Database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification. It includes data such as electrophysiology recordings, imaging data, morphological reconstructions, and RNA and DNA sequencing data.

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• RRID-Legacy
• 10 years ago - by Anonymous

Python package for calculation of extracellular potentials from multicompartment neuron models. LFPy can be used to set up a model, run simulations, and calculate the extracellular potentials arising from activity in the given model neuron. It relies on the Python interface provided by the NEURON simulator.

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• RRID-Legacy
• 10 years ago - by Anonymous

GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT. This GUI allows the user to define a directory. Within this directory it will be continuously (unless closed) searching for new files to analyze via TINT.

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• RRID-Legacy
• 10 years ago - by Anonymous

Neural data acquisition software for signal visualization in neuron recordings along with spike wave-form classification methods. It is made up of the PlexControl software program and the OmniPlex Server.

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• SciCrunch
• 10 years ago - by Anonymous

Software suite for qualitative data analysis for text-based data and higher-order forms of data. Various packages are available and are dependent on the system used and the type of data analysis needed.

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• RRID-Legacy
• 10 years ago - by Anonymous

The SPOT Advanced microscopy software expands your imaging toolkit with a customizable database for archival, merging and pseudo-coloring of monochrome fluorescence channels, custom dialog boxes, variables and taskbars, macro scripting, live histogram, focus drift viewer for time lapse acquisition, image metadata, automatic background subtraction, external trigger options, and many other useful features. Optional modules for peripheral device control, quantitative imaging, live image overlay, extended third party software interfacing, and extended depth of focus processing can be added to the SPOT 5.2 Advanced software to support specialized applications.

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• SciCrunch
• 10 years ago - submitted by Fengshan Yu