Curator Dashboard

Contains comprehensive data on HIV genetic sequences and immunological epitopes. This collection of databases contains tools to visualize and analyze HIV-related data.

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• RRID-Legacy
• 10 years ago - by Anonymous

Portal which provides a unified interface for searching LINCS dataset packages and reagents. Users can use the portal to access datasets, small molecules, cells, genes, proteins and peptides, and antibodies.

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• SciCrunch
• 10 years ago - submitted by Caty Chung

Python script which calculates gene expression for RNA-Sequencing data. It analyzes files in formats such as BED, BAM, and SAM to output data about RNA.

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• RRID-Legacy
• 10 years ago - by Anonymous

Model based Bayesian method for eliminating physiological noise from fMRI data. This algorithm uses image voxel analysis to isolate the cardiac and respiratory noise from the relevant data.

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• RRID-Legacy
• 10 years ago - by Anonymous

Web application which predicts arginine and lysine propeptide cleavage sites in eukaryotic protein sequences using an ensemble of neural networks. Furin-specific prediction is the default. It is also possible to perform a general proprotein convertase prediction.

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• RRID-Legacy
• 10 years ago - by Anonymous

Web application for the prediction of transmembrane helices in proteins using Hidden Markov Models. FASTA formatted sequences can be uploaded via file or copy-paste, and output can be formatted as extensive with graphics, extensive without graphics, or one line per protein. Submissions are limited to 10,000 sequences and 4,000,000 amino acids - each sequence is limited to no more than 8,000 amino acids.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software program that simulates the evolution of nucleotide or amino acid sequences along a phylogeny using common models of the substitution process. A range of models of molecular evolution are implemented, including the general reversible model. State frequencies and other parameters of the model may be given and site-specific rate heterogeneity may also be incorporated in a number of ways. Any number of trees may be read in and the program will produce any number of data sets for each tree.

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• RRID-Legacy
• 10 years ago - by Anonymous

Web application for the analysis and detection of APOBEC-induced hypermutations. The first sequence in the input alignment will be used as the reference sequence, and each of the other sequences will be used as a query sequence.

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• RRID-Legacy
• 10 years ago - by Anonymous

Package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML estimates parameters and tests hypotheses to study the evolutionary process from a phylogenetic tree., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software which creates phylogenetic trees from molecular, morphological and/or behavioral data through high speed computer analysis.

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• RRID-Legacy
• 10 years ago - by Anonymous

Open data repository fully dedicated to MEG data in raw and processed form. The archive also contains anatomical MRI volumes and demographic and questionnaire information. Organized and stored as the Brain Imaging Data Structure (BIDS) with the integration of multimodal electrophysiology data. Directly readable by data-analysis software with Brainstorm. OMEGA will continue to expand, with contributions from the scientific community.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Association whose goal is to foster the spread of accurate scientific information.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Commercial organization which offers a catalog of building blocks, reagents, catalysts, reference materials, and research chemicals for various applications. Analytical services and laboratory services are also provided.

• dkNET
• 10 years ago - submitted by Tylor Keller

Partnership between the National Institutes of Health (NIH), the U.S. Food and Drug Administration (FDA), and multiple biopharmaceutical companies and non-profit organizations whose goal is to increase the number of new diagnostics and therapies for patients and reduce the time and cost of developing them. The group explores three major areas of disease: diabetes, Alzheimer's disease, and rheumatoid arthritis and lupus.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Shared dataset which consists of skull-stripped T1 MRI images and segmented hippocampi of 163 Temporal Lobe Epilepsy (TLE) patients. The T1 and hippocampal segmentation data of TLE patients are uploaded in three separate datasets which can be accessed from the main site.

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• NIF
• 10 years ago - submitted by Matt Travers

Commercial reagent supplier which offers chemical compounds and other reagents for researchers.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Database of Xenopus gene expression patterns, queryable by specific location or region in the embryo. Each entry includes information such as images, species, and gene name.

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• SciCrunch
• 10 years ago - by Anonymous

Automatic software program for profiling spatial gene expression patterns from Fly embryo ISH images. It utilizes image-based genome-scale profiling of whole-body mRNA patterns.

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• RRID-Legacy
• 10 years ago - by Anonymous

Imaging center dedicated to fostering research in the social, behavioral, biological, engineering, and materials sciences where imaging methodologies play a central role. The SLEIC provides the Penn State research community with instrumentation, technological and substantive expertise, educational opportunities, and financial support for conducting magnetic resonance imaging (MRI) and electrophysiology (EEG, ERP) experiments.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software available from brainmap.org to perform meta-analyses via the activation likelihood estimation (ALE) method. It also includes the transforms for icbm2tal conversions.

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• NIF
• 10 years ago - submitted by Maryann Martone