Curator Dashboard

Question answering platform for integration of various Natural Language Processing tasks for the biomedical domain. It is built on top of the SAP HANA database and uses MeSH to navigate sentences extracted from papers. Olelo processes three types of questions based on the type of answer a user desires. Answers can be returned as MeSH ontological terms, short answers or facts, and summaries. Document abstracts associated with the search topic are also available for reference.

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• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Text mining tool for publishers and researchers. UNSILO modules possess functions such as searching, recommending articles with similar topics, mapping article relationships, and providing insights into article trends and metrics.

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• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Software semantic platform for curating and searching figures. Allows to share scientific figures and underlying data in way that is machine readable and findable. Platform for researchers and publishers to make their papers discoverable based on their data content. Used to make scientific papers discoverable based on data content, to enable researchers to find specific data, to test or generate new hypotheses, and to share and connect data. Openly accessible and easily applicable data discovery tool as initiative by EMBO.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Search engine that mines life sciences papers using Natural Language Processing and Machine Learning to clean, tag and structure the data. Insights focus on experimentation and include objective recommendations, ratings and insights for reagents, lab equipment, assays, protocols and researchers.

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• SciCrunch
• 10 years ago - by Anonymous

Text mining tool that finds similarity between documents based on sentences and tokens such as ontology terms, instead of simple similarity based on lexical terms.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Text mining tool from Europe PMC that allows biological terms or concepts to be highlighted for readers on full text articles. These terms and concepts are identified by text mining algorithms, which are developed by a variety of text mining groups. However, it is up to the reader to control which selection of highlighted concepts they see. Once concepts of interest have been identified within the text, they are formatted according to the W3C Web Annotation Data Model and stored in a triple store via the EMBL-EBI RDF Platform. As a reader views an article in a web browser, any annotations in the triple store associated with the article are made available in a menu alongside the article.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Text mining consortium and hub for code and resources. Its ultimate goal is to create an infrastructure that encourages the use, incorporation, and interoperability of existing text mining technologies in scientific publications.

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• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Cross-platform visualization software system for 3D computer graphics, image processing, and data visualization. Various visualization algorithms and advanced modeling techniques are supported within VTK, as well as parallel processing and interoperability with select databases.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Framework for creating 3D neuronal morphologies from point/diameter descriptions.

• RRID-Legacy
• 10 years ago - submitted by David Kennedy

Information portal for practicing endocrinology physicians, trainees, fellows, and other health professionals. Essentially a regularly updated web textbook, it contains endocrinological information written by physicians for other practicing endocrinologists.

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• dkNET
• 10 years ago - submitted by Ko-Wei Lin

Organization studying thyroid biology and the prevention and treatment of thyroid disease and cancer. It offers professionals access to thyroid research resources and offers patients general thyroid information, clinical trial information, and patient support links.

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• dkNET
• 10 years ago - submitted by Ko-Wei Lin

Database for marine genomics data. Users can access genomics datasets from various organisms as well as carry out BLAST and submit genomics information of their own. Data sets include coral, aiptasia, sponges, and sybiodinium.

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• RRID-Legacy
• 10 years ago - by Anonymous

Software tool to quantitatively measure genome assembly and annotation completeness based on evolutionarily informed expectations of gene content.

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• SciCrunch
• 10 years ago - by Anonymous

Foundation to support research in and diagnosis of adrenal diseases. The portal provides basic information about adrenal diseases as well as a community for patients.

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• dkNET
• 10 years ago - submitted by Ko-Wei Lin

International non-profit organization for patients, relatives, and physicians with pituitary tumors and disorders.

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• dkNET
• 10 years ago - submitted by Ko-Wei Lin

Database which provides annotated sequence data for the genomes of basidio and ascomycete yeasts. The resources provided include genetic element pages, data sets for downloading, quick and advanced searches, facilities for BLAST comparisons, and a genome browser powered by JBrowse from GMOD.

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• SciCrunch
• 10 years ago - submitted by Bin He

Collection of analysis scripts for pCASL (pseudo-Continuous ASL) data.

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• NIF
• 10 years ago - submitted by Maryann Martone

test resource submitted through NIF community

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• NIF
• 10 years ago - submitted by James Go

Software package for modeling body biomechanics for use with the Vicon motion capture system. Bodybuilder allows users to, among other things, edit and modify trajectories and interpolate broken trajectories, model body segments and joints, create kinematic and kinetic models, and output results to text or file.

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• NIF
• 10 years ago - submitted by Maryann Martone

Data capture software for use with Vicon motion capture system. Its features include MATLAB integration, Python pre-installed, customized workflow, and automated quality assessment.

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• NIF
• 10 years ago - submitted by Maryann Martone