Curator Dashboard

Web-based annotation tool for plant chloroplasts and animal mitochondrial genomes. DOGMA allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Graphical user interface for multiple sequence alignment and molecular phylogeny. SeaView also generates phylogenetic trees.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Conversion software developed by Illumina that both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software toolkit for the processing of ancient and modern HTS data. PALEOMIX also aids in metagenomic analysis of the extracts from the HTS processing.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Method for mitochondrial baiting and iterative mapping. MITObim assembles novel mitochondrial genomes of non-model organisms directly from total genomic DNA derived NGS reads.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. Tool to annotate core genes in eukaryotic genomes (that was replaced by BUSCO). Its resulting core gene dataset can be used to train a gene finder or to assess the completeness of the genome or annotations., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Gene alignment tool from the EBI which predicts gene structure using similar protein sequences. See also the associated GenomeWise tool.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Visualization software that allows users to create, browse, and share annotated DNA sequence files from SnapGene.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

Molecular biology software for visualizing and documenting gene constructs for InFusion cloning, Gibson assembly, restriction cloning, PCR, and mutagenesis.

• Resource
• SciCrunch
• 10 years ago - submitted by Yueling Li

Collection of image analysis software developed for microbial ecology.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

ASU's Master of Science in clinical research management advances your nursing and health care career, providing skills for a career in the diverse and complex field of clinical research management.

• Resource
• NIF
• 10 years ago - submitted by Ange DuBois

ASU's Master of Science in clinical research management advances your nursing and health care career, providing skills for a career in the diverse and complex field of clinical research management.

• Resource
• NIF
• 10 years ago - submitted by Ange DuBois

Private organization that offers resources and serves as a community for those recovering from addiction and to help patients find the highest quality care for a successful recovery.

• Organization
• SciCrunch
• 10 years ago - submitted by Yueling Li

Public university located in Boston, Massachusetts that offers degree programs in the social sciences, humanities, and sciences.

• Resource
• SciCrunch
• 10 years ago - submitted by Jamie Li

TomoMinerCloud is a cloud-based version of the TomoMiner software. Like its counterpart, it permits users instant access to cloud-based high performance features for large-scale subtomogram classification, alignment, and averaging. DC Zachary Frazier, Min Xu, Frank Alber. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis. Structure (2017), in press.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Software platform for large-scale cryo electron subtomogram classification, alignment, and averaging.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Statistical software for ROC curve analysis. MedCalc performs several statistical tests such as method comparison, method evaluation, reference intervals, and meta-analysis.

• Resource
• dkNET
• 10 years ago - submitted by Maryann Martone

Software for empirical gramians for model reduction of (nonlinear) input-output systems.

• Resource
• SciCrunch
• 10 years ago - submitted by Christian Himpe

Software toolkit for short-reads FASTA/FASTQ files preprocessing.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

Image acquisition and analysis software suite for Hamamatsu imaging devices. Hamamatsu Photonics imaging system for microscopy.

• SciCrunch
• 10 years ago - submitted by Yueling Li