Curator Dashboard

Consortium of clinical study data providers. Its aim is to help the data sharing community drive scientific progress and improve medical care by facilitating access to patient-level data from clinical studies.

• Resource
• SciCrunch
• 10 years ago - submitted by Isabella Froman

Database for visualizing and making use of public ChIP-seq data. ChIP-Atlas covers almost all public ChIP-seq experiments and data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ, or ENA.

• Resource
• SciCrunch
• 10 years ago - submitted by Isabella Froman

It is a Recombinant Human IGF-I.

• SciCrunch
• 10 years ago - submitted by CEMRE CELEN

It is a Recombinant Human IGF-I.

• SciCrunch
• 10 years ago - submitted by CEMRE CELEN

It is a recombinant mouse growth hormone.

• Resource
• SciCrunch
• 10 years ago - submitted by CEMRE CELEN

Gene prediction method that identifies potential coding regions based on the mapping of reads from an RNA-Seq experiment.

• Resource
• SciCrunch
• 10 years ago - by Anonymous

FaST-LMM (Factored Spectrally Transformed Linear Mixed Models) is a set of tools for efficiently performing genome-wide association studies (GWAS), prediction, and heritability estimation on large data sets.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. The algorithm uses cyclical coordinate descent in a path-wise fashion.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Software that analyzes and estimates heritability. LDAK adjusts for linkage disequilibrium (LD) by calculating SNP weightings which downweight the contribution of SNPs in highly tagged regions.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Source code in Python for implementation of the warped linear mixed model. It automatically learns an optimal "warping function" (or transformation) for the phenotype as it models the data.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Software R package for phylogenetic comparative biology. The package contains various functions for phylogenetic analysis of comparative data from species.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Source code that infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT, WAG, or LG models of amino acid evolution.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Source code for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. It was originally designed for processes observed at arbitrary times in continuous time but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Sequence element enrichment analysis tool to perform pan-genome-wide association studies in bacteria.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Fully automated tool for primer pair design in small- to large-scale real-time reverse transcription qPCR analyses. It offers design and specificity checking with highly customizable parameters and is available for use with publicly available eukaryotic transcriptomes.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Collection of standardized stimuli of dynamic, prototypical facial expressions of pain, the six basic emotions, and a neutral display. The set can be used in cognitive, social, clinical, and neuroscience studies on facial expressions and their social communicative functions.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Private, nonprofit organization that promotes the humane treatment of animals in science through voluntary accreditation and assessment programs.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Searchable, manually curated collection of Kruppel-type zinc finger genes (KZNFs) in primates with finished or high quality draft genomes.

• Resource
• SciCrunch
• 10 years ago - submitted by Jamie Li

Web-based transporter resource that provides access to the TransCure interdisciplinary research network, the Genomic Transporter Database, and the Biomedical Transporter Conferences page.

• Resource
• SciCrunch
• 10 years ago - submitted by Jamie Li

Compilation of mammalian mitochondrial tRNA genes. Sequences are classified into families according to the amino acid specificity of the different tRNAs as defined by the anticodon triplets. Each sequence is displayed linearly with color codes indicating secondary structural domains.

• Resource
• SciCrunch
• 10 years ago - submitted by Jamie Li