Curator Dashboard

Core facility that supports basic, translational, and clinical research in the digestive diseases by providing access to human materials and resources in statistics and study design. Its services promote translation of basic research advances into improved clinical care by offering fresh and archived human specimens, associated clinical metadata, biostatistics and aid in study design.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Core facility that provides Center investigators and their laboratories the tools and advice needed to establish and study mouse (including transgenic and knockout) and human (i.e. GI organoids) physiology of GI disease.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Core facility that supports basic, translational, and clinical research in the digestive diseases by providing access to human materials and resources in statistics and study design. It also aims to to forge connections and support collaboration between HDDC Clinical Associates and Members, support a well-organized infrastructure for acquisition and storage of clinical samples, and provide professional support in biostatistics and study design to HDDC members and Clinical Associates.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Center that aims to advance basic science and translational digestive diseases research at the Johns Hopkins University School of Medicine. Its goal is to improve the health of patients with the broad spectrum of gastrointestinal and hepatic disorders.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Core facility that provides the infrastructure, biologic resources, expertise, and training for cross-disciplinary research on epithelial biology and immune function in mucosal surfaces and solid organs of the GI tract.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Community of scientists focused on the study of epithelial cell function and mucosal biology including inflammation and host defense of the gastrointestinal tract. It focuses on the intestinal and inflammatory bowel diseases; gut microbiology; and stem cell and developmental biology of the intestine and liver in organ physiology, regenerative medicine, and metabolism.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman

Provides human microbiome datasets and minimum reporting standards established by DCC, from both initial HMP-1 phase and iHMP. Offers to query and retrieve metagenomic, metatranscriptomic, human genetic, microbial culture, and many other data types from each project. Provides integrated longitudinal datasets from both microbiome and host from different cohort studies of microbiome associated conditions.

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• dkNET
• 10 years ago - submitted by Ko-Wei Lin

Software tool which allows the automatic and high throughput measure of root length, as well as extra associated measures such as curvature. The user must supply start points for each root, and exemplar patches of nearby background. The software will then trace the main root to the tip, in every image in a timeseries, and record the results.

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• SciCrunch
• 10 years ago - by Anonymous

Software tool for quantification of root system architectures in range of plant species, grown and imaged in variety of ways. Root phenotyping software driven by deep learning. Measurements can be exported directly in RSML format, where additional traits can be calculated later using simple plug-in system.

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• SciCrunch
• 10 years ago - by Anonymous

Modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for the analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM) and it supports a lot of SPM data formats. However, it can be used for general height field and (greyscale) image processing, for instance for the analysis of profilometry data or thickness maps from imaging spectrophotometry.

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• RRID-Legacy
• 10 years ago - by Anonymous

European project that aims to improve the care for patients with Traumatic Brain Injury. It provides general information and aims to be a communication platform for patients, scientific participants and investigators.

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• RRID-Legacy
• 10 years ago - by Anonymous

Ontology of drug targets to be used as a reference for drug targets, with the longer-term goal of creating a community standard that will facilitate the integration of diverse drug discovery information from numerous heterogeneous resources. The project itself aims to develop a novel semantic framework to formalize knowledge about drug targets with a focus on the current IDG protein families.

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• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 5,2026.ImageJ plugin that performs semiautomated analysis of randomly selected sets of nervous system fibers.

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• RRID-Legacy
• 10 years ago - submitted by Maria Stößel

Biorepository that stores human tissue, blood, and biofluid samples in frozen, ffpe, and tissue microarray form for research.

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• RRID-Legacy
• 10 years ago - by Anonymous

Statistical modeling program that provides a wide choice of models, estimators, and algorithms in a program that has graphical displays of data and analysis results. Mplus allows the analysis of both cross-sectional and longitudinal data, single-level and multilevel data, data that come from different populations with either observed or unobserved heterogeneity, and data that contain missing values. Analyses can be carried out for observed variables that are continuous, censored, binary, ordered categorical (ordinal), unordered categorical (nominal), counts, or combinations of these variable types. In addition, Mplus has extensive capabilities for Monte Carlo simulation studies, where data can be generated and analyzed according to any of the models included in the program. The Mplus modeling framework draws on the unifying theme of latent variables. The generality of the Mplus modeling framework comes from the unique use of both continuous and categorical latent variables. Continuous latent variables are used to represent factors corresponding to unobserved constructs, random effects corresponding to individual differences in development, random effects corresponding to variation in coefficients across groups in hierarchical data, frailties corresponding to unobserved heterogeneity in survival time, liabilities corresponding to genetic susceptibility to disease, and latent response variable values corresponding to missing data. Categorical latent variables are used to represent latent classes corresponding to homogeneous groups of individuals, latent trajectory classes corresponding to types of development in unobserved populations, mixture components corresponding to finite mixtures of unobserved populations, and latent response variable categories corresponding to missing data.

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• NIF
• 10 years ago - submitted by Maryann Martone

DAPI

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• RRID-Legacy
• 10 years ago - submitted by Roberta Piovesana

live dead Assay

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• RRID-Legacy
• 10 years ago - submitted by Roberta Piovesana

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 6, 2017. Detection instrument that gathers absorbance, fluorescence, and luminescence data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• RRID-Legacy
• 10 years ago - submitted by Roberta Piovesana

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 7, 2017. Software designed for objective quantification/counting of PLA signals in cells and tissue images generated from fluorescence microscopy. The nuclei are automatically detected and cytoplasm size estimated, enabling single cell statistical analysis of expression levels in tissue or cell populations.

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• RRID-Legacy
• 10 years ago - submitted by Javier Avila

High-resolution microscope camera designed for low magnifications and enlargements in brightfield imaging. Its features include fast focusing, a large native pixel size, and a supported cooling combine for clear fluorescent imaging and documentation.

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• SciCrunch
• 10 years ago - submitted by Isabella Froman