Curator Dashboard

A software application which provides the source code for the Rayburst Algorithm. The fully automated algorithm casts rays in a 2D/3D dataset without the use of pre-generated ray tables. It is implemented in ANSI C as a single module. The most current version is Version 1.1, last updated on Aug. 15, 2006.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which allows reconstruction of neuronal structures from confocal and multi-photon images. NeuronStudio provides tools for manual, semi-manual, and automatic tracing of the dendritic arbor, as well as manual and automatic detection and classification of dendritic spines. Advanced 2D and 3D visualization techniques facilitate the verification of the reconstruction, as well as allowing accurate manual editing. The most current version is Version 0.9.92 which was last updated on November 19, 2009.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database that houses human subjects data related to mental health research. Data from 691 subjects are shared in RDoCdb and data from 100,500 subjects are shared in the NIMH Data Archive. Users can plan for data submission, share data, query data, or share their results related to a publication or finding.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Repository for metabolomics data and metadata which provides analysis tools and access to various resources. NIH grantees may upload data and general users can search metabolomics database. Provides protocols for sample preparation and analysis, information about NIH Metabolomics Program, data sharing guidelines, funding opportunities, services offered by its Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, and training workshops.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A repository which supports the search, retrieval, and display of large virus sequence data sets concerning the viruses of Dengue, West Nile, and Influenza. Users can search sequences based on a number of biological and clinical criteria and selected sequences can be downloaded or analyzed using a variety of web-based tools and displays. Virus Variation is an extension of NCBI's Influenza Virus Resource.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which provides viral and viroid genome sequence data and resource tools. Al viral genomes are downloadable and a complete RefSeq release of viral and viroid genome sequences are available.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

An online repository which houses sequencing data from gel and capillary platforms (such as Applied Biosystems ABI 3730®). Most sequences are derived from Whole Genome Shotgun sequencing. Large data sets as well as only a few sequences can be obtained.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A data set of defined genomic sequences used as reference standards for well-characterized genes. These standard nucleotide sequences serve as foundations for locating mutations, establishing conventions for numbering exons and introns, and defining the coordinates of other variations. Sequences are aligned to reference chromosomes. RefSeqGene is a subset of NCBI RefSeq.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application which supplies software tools to develop and maintain pathway/genome databases (PGDBs). These include the development of organism-specific databases, metabolic reconstruction and metabolic-flux modeling, scientific visualization and web publishing of organism-specific databases, analysis of gene-expression and metabolomics datasets, comparative genome and pathway analyses, and analysis of biological networks.

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• SciCrunch
• 12 years ago - by Anonymous

A web application which provides tools to share references and generate bibliographies with colleagues, organize and access references, and track metrics for ACS articles. Articles are automatically synced to user libraries and are accessible from multiple devices.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A software application that allows users to add and store research content directly from the web. Users can use the tool to add research content and bibliographic references directly to their Zotero library from their browser. The application stores PDFs, images, audio and video files, and snapshots of web pages on a single searchable interface.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database which holds summaries of landmark clinical trials. The topics of contributed articles range across various biomedical fields and disciplines such as immunology, nephrology, and urology.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A web application which organizes and recommends new scientific literature to users' news feeds based on keyword searches and user preferences. The site contains materials such as articles, posters, patents, grants, videos, and events.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A web application which finds new and relevant scientific literature based on keyword searches and filters. Users can also share, organize, and collaborate on papers using tools within Scizzle.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A web application which organizes current scientific literature by fields, people, institutes, labs, places, and historical sets they are a part of. Sciencscape allows users to subscribe to topics to receive new material, as well as provides visual representations to organize recent and most cited papers.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

A database of flow cytometry experiments where users can query and download data collected and annotated according to the MIFlowCyt data standard.

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• SciCrunch
• 12 years ago - submitted by Anita Bandrowski