Curator Dashboard

Software tool for rapidly computing and estimating evolutionary distance between closely related genomes. Because andi does not compute full alignments it scales even up to thousands of bacterial genomes.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Analysis software for dynamic contrast enhanced magnetic resonance images with implementation of a pixel-by-pixel deconvolution approach. It quantifies T1-weighted contrast-enhanced dynamic MR imaging (DCE-MRI) perfusion data as an OsiriX plug-in.

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• RRID-Legacy
• 9 years ago - by Anonymous

Source code that performs multiple alignment of peptidic sequences. It utilizes posterior decoding and a sequence-annealing alignment, instead of the traditional progressive alignment method.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Web application to perform program-oriented conversion of DNA and protein alignments and transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). The predictions (embl format) can be automatically loaded into Artemis genome viewer.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Simulation software for experimental evolution of microorganisms. Aevol is a digital genetics model for the study of structural variations of the genome (e.g. number of genes, synteny, proportion of coding sequences).

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software toolkit for the analysis and evaluation of genome annotations. The toolkit includes a variety of analysis programs, e.g. for comparing distinct sets of gene structure annotations (ParsEval), computation of gene loci (LocusPocus) and more.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Brain connectivity atlas to create systematic, digital repository for data on connections between different cortical areas, in primate species. Data repository for connections between different cortical areas in marmoset monkeys. Allows access to data set and enables other interpretations of data, in light of future evolution of knowledge about marmoset cortex.

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• RRID-Legacy
• 9 years ago - submitted by Piotr Majka

Compact confocal microscope with highly sensitive GaAsP detection and fast linear scanning. The airyscan system allows capture images with high sensitivity and superresolution compared with conventional confocal microscope., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 9 years ago - by Anonymous

Perimed. Monitor blood circulation in real-time. Range of probes for different flaps. Sensitive laser Doppler technique

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• RRID-Legacy
• 9 years ago - by Anonymous

Thermo Fisher Scientific. Catalog number. P36934. ProLong™ Gold Antifade Mountant. Cellular Imaging

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• RRID-Legacy
• 9 years ago - by Anonymous

Doccol Corporation. Catalog No.: 403956PK5Re. Silicone rubber-coated monofilament for MCAO model. Filament size 4-0, diameter 0.185 mm, length 30 mm; diameter with coating 0.39+/- 0.02 mm; coating length 5-6 mm. Pack of 5 filaments. Reusable.

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• RRID-Legacy
• 9 years ago - by Anonymous

Freezing microtome. Microm Laborgerate GmbH. Equipment for obtaining thick slices from small organs.

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• RRID-Legacy
• 9 years ago - by Anonymous

Zen software to analyze confocal images.

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• RRID-Legacy
• 9 years ago - by Anonymous

FSoftware for field-of-view normalization to minimize mismatch in different subjects' images. It aids that streamline analysis of large-scale brain MRI datasets.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software toolkit for analysis of MR brain imaging data. MRTool runs on Apple computers and PCs and requires SPM12.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Laser equipment that contains two wavelengths on the same handset, Red Laser and Infrared Laser. Currently Lasertherapy has acted in the different dental specialties as an indispensable technological tool. The use of this Photonic Therapy, associated to the most different dental procedures, provides greater comfort to the patients and greater reliability in the work of the dental surgeon.

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• RRID-Legacy
• 9 years ago - submitted by Andre Guimaraes

Software toolkit for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control. This package facilitates pre-processing, quality control, normalization and visualization of scRNA-seq data.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. SC3 is capable of identifying subclones from the transcriptomes of neoplastic cells collected from patients.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software package that implements a set of statistical methods for analyzing single-cell RNA-seq data, including differential expression analysis (Kharchenko et al.) and pathway and geneset overdispersion analysis (Fan et al.)

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous