Curator Dashboard

Software which provides a framework for the secure storage of Personal Identifyable Information (PII) for a multi-site longitudinal project centrally. Used in Adolescent Brain Cognitive Development (ABCD) Study.

• Resource
• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Exporting REDCap data dictionaries and data to the NIMH National Data Archive (NDA)

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• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Exporting REDCap data dictionaries and data to the NIMH National Data Archive (NDA)

• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Software for metadata-driven electronic data capture to export REDCap data dictionaries and data to the NIMH National Data Archive (NDA). Prepares data submissions as csv formatted spreadsheets for data dictionary spreadsheets and for data spreadsheets.

• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Software that uses a geo-location database to determine individuals' residential environment in Adolescent Brain Cognitive Development (ABCD) study. It performs queries given individuals' residential history in longitude and latitude.

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• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Algorithm for a reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more.

• RRID-Legacy
• 9 years ago - submitted by Pantelis Natsiavas

ReproNim seeks to implement a shift in the way neuroimaging research is performed and reported. Through the development and implementation of technology that supports a comprehensive set of data management, analysis and utilization frameworks in support of both basic research and clinical activities, our overarching goal is to improve the reproducibility of neuroimaging science and extend the value of our national investment in neuroimaging research. Reproducibility is critical because the current literature is fraught with published results that are due to mistakes; or turn out to be false positive (contributed to by the lack of statistical power). More importantly, given the current publication system, it is exceedingly difficult to discern between false positive and true positive finding as data is hard to aggregate, and exact methods are hard to replicate.

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• NIF
• 9 years ago - submitted by Matt Travers

Software that groups vocal elements of birdsong by creating a high dimensionality dataset through scoring spectral similarity between vocalizations.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for birdsong analysis that performs automated recording and analysis of animal vocalization. It can record, analyze and manage sound data over prolonged periods.

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• RRID-Legacy
• 9 years ago - by Anonymous

Commercial organization that builds and supplies research-related equipment such as amplifiers.

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• RRID-Legacy
• 9 years ago - by Anonymous

Center to help neuroimaging researchers to find and share data in FAIR fashion, to describe their data and analysis workflows in replicable fashion, to manage their computational resource options so that outcomes of neuroimaging research are more reproducible.

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• SciCrunch
• 9 years ago - submitted by Jeffrey Grethe

Duroc × Landrace × Large White pig is a crossbred species

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• SciCrunch
• 9 years ago - submitted by Kan Gao

One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide.. Regist custom genome software registers custom genomes to Genome Explorer (IN: FASTA).

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• RRID-Legacy
• 9 years ago - submitted by Sonoko Kinjo

One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadGtfToGe_db software loads GTF files to a database for Genome Explorer. It allows the user to browse the results through the GE.

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• RRID-Legacy
• 9 years ago - submitted by Sonoko Kinjo

One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadGffToGe_db for custom genome software loads GFF files of custom genomes to a database for Genome Explorer. It allows the user to browse the results through the GE.

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• RRID-Legacy
• 9 years ago - submitted by Sonoko Kinjo

One stop platform for NGS big data from analysis to visualization. There are about 400 analysis pipelines integrated on Maser. List of all analysis pipelines, including descriptions and approximate execution times, can be found on page for ‘All pipelines’ in the User Guide. loadBED2ge_db software is for visualizing mapping data by Genome Explorer on the web.

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• RRID-Legacy
• 9 years ago - submitted by Sonoko Kinjo

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software to predict the location of ribosomal RNA genes in genomes. It supports bacteria, archaea, mitochondria, and eukaryotes. It takes FASTA DNA sequence as input, writes GFF3 as output, and supports multithreading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for sequence alignments that displays multiple match sequences aligned against a single genomic reference sequence. It can be used for manipulation, display and annotation of genomic data, to check the quality of an alignment, to find missing/misaligned sequence, and to identify splice sites and polyA sites.

• SciCrunch
• 9 years ago - submitted by Isabella Froman

Analysis software for the output from TraDIS (Transposon Directed Insertion Sequencing) analyses of dense transposon mutant libraries. The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for clustering and assembling short reads, especially for RAD-seq. (restriction-site associated DNA sequencing).

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• SciCrunch
• 9 years ago - submitted by Isabella Froman