Curator Dashboard

Platform provides public health surveillance data to better understand the causes, outcomes, effective treatments, and later effects of cancer among children, adolescents, and young adults in the U.S. Developed under the NCI Childhood Cancer Data Initiative (CCDI), the NCCR contributes to the CCDI data ecosystem by serving as a linked infrastructure of central cancer registry data that will integrate various other childhood cancer data—from hospitals, research centers, heath care administrations, and other sources—to enhance access to and utilization of childhood cancer and survivorship data. The NCCR uses the Virtual Pooled Registry Cancer Linkage System to link multiple cancer registries and generate an accurate count of childhood cancer cases by combining information that appears in more than one registry.

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• 11 months ago - by Anonymous

Offers advanced single and combined services including genomics, imaging, metabolomics and lipidomics, in vivo disease modelling, cell-based alternative methods, drug screening, and bioinformatics, providing researchers with essential tools for scientific exploration. Staff members offer advice on experimental design, data processing, and troubleshooting, as well as training to facilitate the use of our technologies.

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• 11 months ago - submitted by Shaman Narayanasamy

Core offers advanced single and combined services including genomics, imaging, metabolomics and lipidomics, in vivo disease modelling, cell-based alternative methods, drug screening, and bioinformatics, providing researchers with essential tools for scientific exploration. Expert staff members offer advice on experimental design, data processing, and troubleshooting, as well as training to facilitate the use of our technologies.

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• 11 months ago - submitted by Manuel Buttini

Software HLA typing tool to determine HLA-I germline alleles by aligning sequencing reads to HLA-A, HLA-B and HLA-C regions present in the IMGT/HLA database, optimized for cancer genomics analysis with support for tumor-normal paired samples and designed to handle complex scenarios including HLA-Y pseudogene detection and loss of heterozygosity assessment. Open-source integrative framework that characterizes the HLA-I locus, including its tumor status from WGS data.

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• 11 months ago - by Anonymous

Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics.

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• 11 months ago - by Anonymous

Bioscience division of the Japanese conglomerate Nichirei Corporation, specializing in biomedical products for the health and life science industries. The company develops, manufactures, and distributes products for immunohistochemistry (IHC), such as diagnostic and research reagents as well as products for cell biology, rapid diagnostics, functional materials, and natural materials processing. Their products support applications in pathological diagnosis, food safety, and cosmetic ingredients.

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• 11 months ago - by Anonymous

Software application that provides search and clustering functionality, typically used with amplicon sequence data. Used to assign sequences to clusters.

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• 11 months ago - by Anonymous

Training and support to research with human embryonic and induced pluripotent stem cells (iPSC). Offers opportunity to dissect early human development, generate models of disease, and develop cellular or drug therapeutics.

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• 11 months ago - by Anonymous

Software Python package for analyzing transcription factor binding patterns from deep learning model attribution scores. It identifies and clusters sequence motifs from contribution scores, maps them to DNA-binding domains, and provides comprehensive visualization tools for regulatory genomics analysis. Used for transcription factor motifs and instances discovery.

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• 11 months ago - submitted by Seppe De Winter

Software Python project for whole slide image acquisition using a fluorescence microscope.

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• 11 months ago - by Anonymous

Software DMC-Behavior Platform for standardized auditory decision-making tasks in head-fixed mice.

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• 11 months ago - by Anonymous

Software napari plugin for flexible mapping of various features (cell bodies, axonal densities, injections sites, optical fibers, Neuropixels probes) to standardized reference spaces included in BrainGlobe. Used for anatomical mapping.

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• 11 months ago - by Anonymous

Software application for media browsing, analysis and annotation. MATLAB GUI for browsing, analyzing and annotating time-synchronized media files.

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• 11 months ago - by Anonymous

Web application to track the pose (position, orientation, size, wing- and leg positions) of multiple flies and maintain their identities throughout video. Outputs features (such as velocity, facing angle to other fly, and wing angles) useful for behavior analysis.

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• 11 months ago - by Anonymous

Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals.

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• 11 months ago - by Anonymous

Software application as lightweight reimplementation of some of the algorithms in the MEME suite in Python.

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• 11 months ago - submitted by Seppe De Winter

Software Microbial Genome Processing toolkit. Flexible linked data framework for phenotype-genotype prediction of microbial traits using machine learning.

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• 11 months ago - submitted by Mike Loomans

Software Python 3 library with good support for both reading and writing VCF. Reads and writes VCF files in Python.

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• 11 months ago - by Anonymous

Web tool for merging csv files intended to be submitted to the open data commons databases including: ODC-TBI, ODC-SCI.

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• 11 months ago - submitted by Anita Bandrowski

In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities.

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• 11 months ago - submitted by chris walsh