Curator Dashboard

Open source simulation software for thyroid homeostasis, based on published nonlinear model of pituitary thyroid feedback control. Simulates pituitary thyroid feedback control, which allows users to study relationship between structure and behaviour of thyroid homeostasis.

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• SciCrunch
• 11 years ago - submitted by Johannes W. Dietrich

A dataset containing the results of three usability studies conducted on a modeled patient using a software tool that visualized the health situation of the patient over time. The modeled patient was diagnosed with Type 2 Diabetes and had begun a coaching program. The study followed the progress of the patient as he/she progressed through the coaching program. An after scenario questionnaire, computer system usability questionnaire, and Nielsens Heuristic Evaluation were used to evaluate the patient. Separate CSV files, available on the website, contain the answers to the questionnaires and the laboratory details.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Software for MS/MS proteomic experiments to compare samples, identify biological relevance, and identify isoforms and protein PTMs. These proteins can be classified based on molecular function or organelle. Users can investigate spectrum details and counts, as well as use high through-put batch processing. Tutorials and a free trial are available through the main site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used to compile images obtained from the Zeiss LSM 510 confocal microscope. The browser can be used for general image archiving and handling and interactive measurement in labs and workgroups. Features include orthogonal sectioning, 3D cut function, 3D view with calculation of single projections, and interactive measurement functions in the overlay dialog, such as scale bar, distance, and area.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A collection of 7 individual software packages that all control the Olympus Imaging systems while also providing different individual features including (but not limited to): basic measurement functions, process automation, ratio analysis, and real time image acquisition.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Biomarker detection and evaluation software which provides an advanced basis for mining unknown potential biomarkers in complex protein profiles. Visualization tools such as stack plots and box-and-whiskers plots can be used to interactively inspect and compare large data sets originating from samples that contain different clinical diagnoses. ClinProTools also supplies sophisticated mathematical algorithms for the discovery of complex biomarker pattern models. Besides validation, class-prediction tools are also integrated to allow the implementation of the whole biomarker detection and evaluation process.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1, 2023. The LSM Image Browser comes with many functions from the Zeiss LSM software package, however, it is not used only for the Zeiss image database. This browser is an ideal tool for general image archiving, handling and interactive measurement in labs and workgroups. Features include orthogonal sectioning, 3D cut function, 3D view with calculation of single projections, interactive measurement functions in the overlay dialog, such as scale bar, distance, area etc.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

3D modeling software used to create, edit, analyze, document, render, animate, and translate surfaces, solids, point clouds, and polygon meshes. It can also be used to analyze and manufacture a variety of products.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A commercial provider of imaging software that works in tandem with Pixera camera and imaging systems.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software that provides subject tracking with body axis alignment and angle of view, which is then used to track body, nose and tail movements without marking the animal. Users may create the scoring system used by the software, as well as zones to observe, quantify, and compare the behavior of an animal in one or more areas. The software features several data acquisition and analysis tools to gather and interpret the data.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

iDigBio is the National Resource for Advancing Digitization of Biodiversity Collections (ADBC) funded by the National Science Foundation. Through ADBC, data and images for millions of biological specimens are being made available in electronic format for the research community, government agencies, students, educators, and the general public.

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• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

Software designed for use in tandem with the Startle Monitor system. It is Windows NT based software with a single input screen for all processes. The user can input session parameters, order a trial list, input subject information, edit trials, and edit sessions.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A video tracking system that takes automated recordings and analyzes animal activity through various arena and maze systems. It can track multiple arenas using one camera, and an unlimited number of zones of interest can be generated for performing spatial analyses or controlling data acquisition. Features include 3-point detection, 3D measurements, access to raw data, and reanalysis of tracking data.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

AMT camera system software that performs digital image acquisition, processing, and storage. An operations manual and software specifications are available on the main site.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used with Illumina sequencing instruments to control PC acivity and perform base call and quality scoring. The primary analysis is performed during the chemistry and imaging cycles of a sequencing run, giving users the option to view data and decide how to proceed in the run.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1, 2023. Software designed to take single or multi-wavelength intracellular ion measurements an provide simultaneous display of the raw data, ratio image, graphs of intensities, ratios, ion concentrations, and a non-ratiometric image for microscope techniques such as a brightfield or phase-contrast image. Two different ratiometric indicators can be imaged and measured simultaneously to provide greater insight to ion exchange and intracellular function regardless of dye loading concentrations, conditions, or emission intensities.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software for Bio-Plex systems which automates data optimization, operates Bio-Plex instruments, and analyzes data.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 11 years ago - by Anonymous

Software for professional vector graphics and rich photo-editing tool. Used for digital drawing.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software that allows users to manually or automatically design custom primers and probes for gene quantitation and allelic discrimination (SNP) real-time PCR applications. It supports assays based on TaqMan and SYBR Green I dye chemistries.

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• SciCrunch
• 11 years ago - submitted by Jessica Cabotaje