Curator Dashboard

Software for combined elementary flux mode and network-embedded thermodynamic analysis.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for performing flux mode analysis in stoichiometric models. FluxModeCalculator enables large-scale elementary flux mode (EFM) computation and uses the OpenMP API to optimally exploit processor architectures with multiple cores., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for computating and calculating elementary flux modes. EFMtool computes elementary flux modes (EFMs) of metabolic networks. EFM computation is a special case of extreme ray enumeration of polyhedral cones.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for next level of genome wide association studies with both individuals and markers in millions. The method releases the requirement that causative genes are evenly distributed on genome and consequently boosts statistical power.

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• SciCrunch
• 9 years ago - submitted by Meng Huang

Software package for processing of high-resolution neuroimaging data. Nighres is a community-developed project that aims to make neuroscience data tools easier to install, use and extend.

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• SciCrunch
• 9 years ago - submitted by Julia Huntenburg

Software that analyzes count data from RNA-capture-seq and ATAC-capture-seq experiments. Using BioConductor RangedSummarizedExperiment objects, atacr implements a set of helper functions and quality control plots specific to the analysis of counts of reads in windows across genomes.

• RRID-Legacy
• 9 years ago - submitted by Dan MacLean

Software for rapidly curating structural variant (SVs) predictions. SV-plaudit provides a pipeline for creating image views of genomic intervals, automatically storing them in the cloud, deploying a website to view/score them, and retrieving scores for analysis.

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• SciCrunch
• 9 years ago - submitted by Jon Belyeu

Software to extract and trace neuronal structure from confocal laser scanning microscope images. It performs the automatic reconstruction of neurons for image stacks and can generate compartmental models of neurons as swc file format data.

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• RRID-Legacy
• 9 years ago - submitted by Hidetoshi Ikeno

Software that provides all the necessary functionality for full-model build up, from CAD data to ready-to-run solver input file. Its integrated Batch Meshing tool leads to results for both shell and volume meshing.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software based on robust registration and simultaneous hippocampal segmentation and longitudinal marker classification of brain MRI of an arbitrary number of time points. The framework comprises two parts: a longitudinal segmentation and a longitudinal classification step.

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• NIF
• 9 years ago - submitted by Matt Travers

Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Software for profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data Used for millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.

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• SciCrunch
• 9 years ago - by Anonymous

Database of naturally processed MHC-restricted peptide ligands and epitopes for customized computational vaccinology.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database for MHC antigenic peptide of Mycobacterium tuberculosis. It aims to make a comprehensive repository of synthetic antigenic peptides predicted from several MHC predication servers.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Software for error correction of optical mapping data.

• RRID-Legacy
• 9 years ago - submitted by Kingshuk Mukherjee

Software for dynamic clamping. It uses National Instruments Boards.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy.

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• RRID-Legacy
• 9 years ago - by Anonymous

Database that consolidates information on genes and phenotypes across multiple resources and allows tracking and exploring of the associations. Part of Gemma, a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick

Web based software for analyzing genomic variants CNVs, SNVs, and Indels and phenotypes. It aims to represent the relationships between discovered variants and phenotypes.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick