Curator Dashboard

A technical computing software and computing environment that provides users with algorithms and mathematical functions for various projects and purposes. The resource incorporates other Wolfram products such as Wolfram Algorithmbase, Wolfram Language, and Wolfram Knowledgebase.

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• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

An image analysis software that can process spectra and other multi-dimensional data-sets. The software package is aimed at processing large data sets from (cryo-) electron microscopy, especially in the field of single particle analyses. This software can be used with light and raster-tunneling microscopes, computer tomographs, FT-IR spectrometers and other signal collecting devices. This resource provides three-dimensional data processing and angular reconstitution modules that allow the three-dimensional reconstruction with point-group symmetry from the two dimensional electron microscopy projections. These models aid in the analysis of the macromolecules.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 12,2024. A digital slide image software that is used with the VENTANA iScan Coreo Au slide scanner. This software helps facilitate viewing high quality images with little latency. The image view software can also support the viewing of multiple images simultaneously.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A fully customizable program that uses a graphical user interface to locate transcription factor-binding sites in genomic sequences. xFITOM scans DNA or RNA sequences for putative binding sites as defined by a collection of aligned known sites, a consensus sequence in IUPAC degenerate-base format, or a combination of the two.

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• SciCrunch
• 11 years ago - submitted by Ivan Erill

A consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function. Their goal is to coordinate and integrate research to support the development and implementation of strategies such as de novo repair of nephrons, the re-generation of nephrons, and the in vitro engineering of a biological kidney to enhance renal repair and promote the generation of new nephrons in the postnatal organ. Investigators may apply for funding of a kidney-related project through the RBK Partnership Project. Funded projects would join the consortium.

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• dkNET
• 11 years ago - submitted by Ko-Wei Lin

Bioimaging analysis software used to acquire quantitative and qualitative data from various types of biological samples. The software provides a variety of image modification features, including contrast optimizing, image printing, 1-dimensional densitometry, fragment length and molecular weight determination, and 2-D densitometry.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Audio recording and editing software. ProTools LE software allows sound mixing, batch fades, and other audio mixing techniques.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Sound analysis software used to process and analyze animal acoustic communications. Its features include digital filtering, real-time spectrogram display, and advanced metadata management. Avisoft SASLabPro is designed to accommodate large numbers of sound files and includes organizational features, including labeling options for single point data and time section labels.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software for acquisition and analysis of flow cytometry data. FloMax data analysis works with data from flow cytometers that support the flow cytometry file standard (FCS). FloMax operates on computers with Windows 95, 98, and 2000., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A multi-channel triggering hard-disk recording system designed specifically for bio-acoustics, although it can be used for other audio signals. This software uses real-time spectrographic and spectrum display and posesses a customizable metadata input tool for embedding user-defined data directly into the resulting .wav files. The maximum sampling rate for real-time display and streaming to disk depends on the type of acquisition board and computer performance. These embedded records can later be accessed from SASLab Pro and integrated into another metadata base.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used to control and calibrate the Palm Robo Microbeam microscope according to user specified parameters. Processes such as system calibrations and correct laser settings are fully automated.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Software used to create phylogenetic trees through neighbor-joining, parsimony, maximum likelihood methods and bootstrap confidence tests. Specific taxonomic species groups as well as conserved regions can be defined using a mouse standard and then stored into sequence files. Reconstructed trees can be drawn, edited, printed, stored and evaluated according to numerous criteria.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Automated scanning software used in conjunction with the Leica DM6000B microscope to obtain whole-slide image mosaics of histological slides. When performing a scan, Turboscan or the standard scan may be used.

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• RRID-Legacy
• 11 years ago - by Anonymous

A microscopic image capturing software that is meant to be used in conjunction with Q-imaging cameras. Image workflow is managed using a multiple document interface (MDI). There is also a publish image feature to capture high quality images of what is on the screen, including the overlay, the region of interest, and capture of single frames in time lapses or movies.

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• RRID-Legacy
• 11 years ago - by Anonymous

A 3D analysis software for scientific and industrial data. Avizo is used for image data processing, exploration, and analysis. This software is designed to mainly be used commercially in industries including but not limited to: material sciences, life sciences, geo-sciences, and engineering.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

Image analysis software designed to process, measure, and analyze images on a personal computer. It is used with either an Olympus brand microscope or an Olympus brand digital camera. The AnalySiS FIVE software can be used to directly control an Olympus brand microscope or camera, take measurements, store results, and analyze the resulting images up to the particle level.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A video-based system to detect animal movement in fear conditioning experiments, as well as movements in learned helplessness experiments. FreezeFrame can detect animal movements (as small as 1mm) and actions, including grooming, sniffing, turning, and rearing. It can also collect and process data for learned helplessness experiments, such as Tail Suspension and the Porsolt Forced Swim Test. This software can monitor animals for up to 15 times per second.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A MATLAB toolbox for processing the functional areas of the brain using multi-modal fMRI data for pre-surgical mapping. It is composed of three types of individual-level ICA analyses for user use. Traditional ICA (task) can be used for task fMRI. Either Traditional ICA (rest) or ICA with DICI (rest) can be used for rs-fMRI. Traditional ICA (rest) is designed for users who already have a hypothesis of the pattern of the target component and want to have manually set components by themselves. ICA with DICI (rest) is completely automatic, given that the user provides a template (provided). The software utilizes an automatic component identification method that is based on the discriminatory-index. All the components from multiple ICA runs with multiple component settings are ranked and compiled.

• RRID-Legacy
• 11 years ago - submitted by David Kennedy

Statistical software for visualization, analysis and interpretation of MALDI imaging data. Its features are tailored to mining MALDI imaging data and include univariate analysis, unsupervised and supervised multivariate analysis, and preprocessing of data. Tutorials, software trainings, and example data sets can be accessed from the website.

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• RRID-Legacy
• 11 years ago - submitted by Maryann Martone

Imaging software for monochrome and color image acquisition and processing. It is fully integrated with Olympus microscopes, as well as third party stages and other devices, and supports various CCD and video cameras and TWAIN devices.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje