Curator Dashboard

A program for cluster analysis by fitting a mixture of Gaussians. KlustaKwik works by implementing a hard EM algorithm with unconstrained covariance matrices. It was designed for the specific problem of spike sorting of multi-electrode arrays, but can be used for any application.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A vector graphics software which runs on Windows, Mac OS X and GNU/Linux. It can import and export various file formats, including SVG, AI, EPS, PDF, PS and PNG. Features include object creation, object manipulation, color editing, and text editing.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software for spike waveform-to-cell classification which can be used both online and offline. The user can identify and isolate clusters/cells using 3D manipulation, as well as calculate waveform parameters like peak, valley, area, and energy.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

Software for identifying, characterizing, and quantifying proteins in biological samples. Can be used for range of proteomics workflows such as protein and peptide identification, PTM analysis, and isobaric mass tagging for quantification. Supports multiple database search algorithms and multiple dissociation techniques., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1, 2023. A full service viral vector core facility located at the University of Pennsylvania. This facility provides technological resources for investigators in their use of viral based vectors for gene transfer. The main objective of this core is to provide investigators with state-of-the-art vector technology for preclinical studies and other basic research applications, that will then increase understanding of gene function and the further development of therapeutic vectors.

• Resource
• SciCrunch
• 11 years ago - submitted by Alessandro Bilella

A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Maryann Martone

An imaging software for collecting and analyzing astronomical image data. This software includes observatory integration, and control of astronomical equipment to integrate the researcher's camera, autoguider, filter wheels, focuser, camera rotator, telescope mount, observatory webcam, remote switches, weather station and dome.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software for performing fast scan cyclic voltammetry recordings in brain tissue for detection of neurotransmitters. It was written in the LabView programming language and can be used to provide command voltage to equipment and record the resulting waveforms. The analysis portion of the software can view and export data, apply noise filters, perform chemometric and waveform kinetic analysis, and create figures.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software tool used for functional enrichment and interaction network analysis of genes and proteins. Users can search against a default background database or load customized database. The results can be depicted as venn, bar, column, pie and doughnut charts.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software for analyzing digital assay data. The software performs RNA quality control, comparison between multiple chips, smear analysis, and data export in multiple formats.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software for managing, testing, and drawing primers. The software can locate primers for target sequences, calculate the quality score, predict amplified fragments and dimers, and create graphic representations of the primers.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A technical graphing software that can be used to create various graph types including 2D or 3D plots, statistical graphs, pie charts, contour plots, and surface plots. The user can customize the graph, axes, legend, and plots.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A software designed to aid in macro or micro photography using the focus-stacking technique. It takes multiple shots at many different focus distances and combines the images to a fully focused image.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A live cell imaging software that allows for control of iXon EMCCD and sCMOS cameras in synchronized combination with a number of additional imaging hardware devices. iQ can be used to run experiments to investigate dynamic processes in both single cells and multicellular systems, image fixed samples, and generate 3 dimensional image volumes for analysis.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

A platform that allow users to visualize and analyze transcriptome data related to the genetics that underlie the development, function, and dysfunction stages and states of the brain. Users can search for cerebellar development genes by name, ID, keyword, expression, and tissue specificity. Search results include general information, links, temporal, spatial, and tissue information, and gene category.

• Resource
• SciCrunch
• 11 years ago - submitted by Yueling Li

A method to automatically extract the neurite centerline and compute orientation properties at multiple scales using source code. Code is dependent on standard Python-based scientific packages and presegmentation of images.

• RRID-Legacy
• 11 years ago - submitted by David Kennedy

Software for automatic quantification of in vivo proton MR spectra. Though it is mainly used for brain analysis, it can be used for a variety of analyses in different areas of the body. It receives time-domain data as input and gives a one page summary output. It is fully automatic, non-interactive, and operator-independent., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• NIF
• 11 years ago - by Anonymous

A company that provides a variety of next generation sequencing services. The company provides researchers with whole genome resequencing, exome sequencing, targeted sequencing, transcriptomics, and epigenome sequencing.

• Resource
• SciCrunch
• 11 years ago - submitted by Ivan Erill

A tool for various statistical tasks involved in analyzing survival data which provides a uniform platform to facilitate efficient statistical analyses of survival data in the aging field. The statistical features of OASIS include the calculation of Kaplan-Meier estimates, mean/median lifespan, mortality rate, Mantel-Cox Log-Rank test, Fishers exact test, weighted Log-Rank test, Kolmogorov-Smirnov test and Neymans smooth test. Moreover, OASIS generates survival and mortality curves that can be easily exported and modified by using common graphic softwares.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje

Mathematical software that can compute both numeric and symbolic solutions. It can be used to analyze, explore, visualize, and solve mathematical problems.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Jessica Cabotaje