Curator Dashboard

Software package for the inference of bacterial microevolution using multilocus sequence data. It is used to identify the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023.Software as a stand-alone reference implementation for the Relaxed Neighbor Joining (RNJ) algorithm. Used in distance-based phylogenetic tree reconstruction method to process large sequence datasets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software that automates assembly circularization and produces accurate linear representations of circular sequences. It is used for assembling of DNA sequence data of complete bacterial and small eukaryotic genomes.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software tool for indexing and retrieval of nucleotide sequences from FASTA (DNA and protein sequence alignment software) record databases. It has the option to compress data records.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software to scan an input genomic sequence (dna/rna/protein). It searchs for a subsequence that has an exact match, substitutions (Hamming distance), and/or insertion/deletions with supporting alphabet ambiguity.

• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software providing a set of ready-to-use C++ libraries as re-usable tools to visualize, edit, print and output data for bioinformatics. It uses sequence analysis, phylogenetics, molecular evolution and population genetics to help to write programs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software that performs clinical interpretation of ambiguous ClinVar annotations. This software takes batches of variants as input and queries NCBI eutilities to generate scoring metrics.

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• SciCrunch
• 9 years ago - submitted by Robert Butler

Command line program to read, modify, annotate and generate genomic data. Can write files to .gff3 or to the NCBI's .tbl format.

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• SciCrunch
• 9 years ago - submitted by Scott Geib

Source code of a Cytoscape plugin for functional enrichment visualization. It organizes gene-sets, such as pathways and Gene Ontology terms, into a network to reveal which mutually overlapping gene-sets cluster together.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for merging massive VCF files into a single VCF file or TPED file. Source codes can be slightly modified to fit into other types of sorted merging of Omics data.

• RRID-Legacy
• 9 years ago - submitted by Xiaobo Sun

Software for viewing and analyzing electrophysiological data. It features an embedded Python shell that allows you to extend the program functionality by using numerical libraries such as NumPy and SciPy.

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• RRID-Legacy
• 9 years ago - by Anonymous

Free, open-source MATLAB-based software toolkit for analyzing edited 1H magnetic resonance spectroscopy (MRS) data.

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• NIF
• 9 years ago - submitted by Matt Travers

Web server implemented in JAVA and PHP for annotating genetic variants by m6A function. It predicts and annotates N6-methyladenosine (m6A) alterations from genetic variants data such as germline SNPs or cancer somatic mutations. It employs two accurate prediction models for human and mouse using Random Forest algorithm. It conducts a statistical analysis for all the predicted m6A alterations. Provides statistical diagrams and a genome browser to visualize the topology characteristics of predicted m6A alterations.

• RRID-Legacy
• 9 years ago - submitted by Ben Tse

Software for acquiring images from a video source, such as vision cameras, frame grabbers and video converters. It can capture single images, sequences of single images, and live video streams from connected video sources.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for comparing large genomes and exploiting highly conserved sequences as evolutionary-stable "anchors". The pipeline maps a newly sequenced genome (assembled in scaffolds) on a reference genome without the need of a supercomputer.

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• SciCrunch
• 9 years ago - submitted by Vasileios Panagiotis Lenis

Research project examining how biological, psychological, and environmental factors during adolescence may influence brain development and mental health. Using brain imaging and genetics, the project will help develop prevention strategies and improved therapies for mental health disorders in the future., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software that maps whole-genome and targeted bisulfite sequence reads to reference genomes. It is especially useful for reads obtained using post-bisulfite adaptor tagging (PBAT)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• RRID-Legacy
• 9 years ago - submitted by Sonoko Kinjo

Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of cancer control interventions and program materials. It is designed to provide program planners and public health practitioners easy and immediate access to research-tested materials.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1st, 2026. Software for coding video data for research purposes such as animal behavior. Solomon Coder can handle several video formats, represent behaviors and events with buttons, analyze various types of data, and perform other necessary video coding functions.

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• RRID-Legacy
• 9 years ago - by Anonymous