Curator Dashboard

A shared facility at Stanford University dedicated to research and teaching for researchers and students in cognitive and neurobiological sciences. The core instrumentation provided by the CNI is a research-dedicated 3T MRI scanner, a GE Discovery MR750. The CNI has an array of MRI Coils, including Nova Medical 32-channel and 16-channel head coils and a GE 8-channel head coil. For stimulus delivery they provide a custom large-screen flat-panel display as well as a goggle system with eye tracker and audio. Other equipment includes an MR-compatible 256-channel EEG system, a Polhemus 3D digitizer used for EEG electrode localization, Fiber Optic Response Devices (FORP), as well as a MRI Simulator (Mock Scanner).

• Resource
• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

A test-driven framework for formally validating scientific models against data.

• Resource
• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

A startup research, development and innovation company based in The Grand Duchy of Luxembourg working on four major areas: Open Research, as Information Hub; Information Technology, as The Common Brain; Collective Awareness, as Manifesto; and Biophysics, as Human Extensibility. The Information Hub researches a methodology to conduct open research using a collaborative approach designed for multi-disciplinary interventions, multi-scope goal alignment, advanced analytics and a unified research experience for international cooperation. The Common Brain researches an open source intelligent architecture for future internet, one that is deeply sustainable over a highly distributed hybrid network, self-governed, heterogenous, and logical. Manifesto researches a methodology for a collaborative approach for policy making, open standardization, accreditation, verification and compliance. Human Extensibility researches the establishment of the scientific ground for a field of science concerned with the study of the physics and physiology of the human being, to provide techniques and genetic algorithms for human extensibility.

• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

Software to manage Seahorse XFe24 Analyzer, which measures OCR and ECAR of live cells in a 24-well plate format. Users can create and modify assay templates and analyze and manage data.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Kevin Nguyen

A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA.

• Resource
• SciCrunch
• 11 years ago - submitted by James Go

A transgenic mouse supplier which develops mouse lines expressing genetically encoded calcium indicators (GECIs) and optogenetic effectors in lineages relevant to cardiac, vascular, lung and blood diseases. The mouse strains created are designed to allow for inter crossing resulting in co-expression of sensors with discrete emission wavelengths in interacting lineages (e.g. endothelial and smooth muscle cells), as well as optically compatible effector/detector pairs.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A software system to assist with cloning simulation, enzyme operations, and graphic map drawing. Clone Manager can also be used as a way to view or edit sequence files, find open reading frames, translate genes, or find genes or text in files. Clone Manager Professional is an upgraded version of Clone Manager Basic., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 11 years ago - by Anonymous

Software for interfacing with Tucker-Davis System 3 hardware. It is a Python wrapper around Tucker-Davis Technologies ActiveX library. Along with standard operations, the software can conduct type conversions between analog and digital units, handle robust errors, and has a remote procedure call server that allows multiple processes and/or programs to communicate with the hardware across the same connection.

• Resource
• RRID-Legacy
• 11 years ago - by Anonymous

A multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave. Links to examples, exercises, and information for developers are available on the main page.

• Resource
• SciCrunch
• 11 years ago - submitted by Nikolaas Oosterhof

A database which can be used to search for genes critical for a variety of Genito-Urinary system functions and diseases.

• Organization
• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A research organization which aims to conduct a variety of stem cell research projects. These projects include: to CD phenotype the human prostate and bladder using a confocal microscopy, to CD the phenotype of the mouse prostate and bladder, to profile samples of basal and stromal cells using uncultured cells, to confirm cell-type specific expression of genes that were identified by array analysis, and to create a database with the resulting database.

• Organization
• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A European organization primarily concerned with the study of renal disorders. The organization is working towards discovering the genes responsible for renal development, renal disease and the related proteins and their actions. EuReGene consists of a consortium of scientists, clinicians, and SME partners that study functional genomics and their application in kidney research.

• Organization
• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A web-interface that enables users to access and download the processed ChIP chip/seq data of nuclear receptors, co-regulators and histone modifications. The web resources also includes processed differential expression data under ligand induction in conditions matched to ChIP_chip/seq data whenever possible. All the ChIP chip/seq peak regions are annotated with enriched HRE and co-regulator motifs. A list of predicted hormone response genes from integration of nuclear receptor ChIP chip/seq data and differential expression data is also readily available to the users.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A unified data repository of the National Cancer Institute (NCI)'s Genomic Data Commons (GDC) that enables data sharing across cancer genomic studies in support of precision medicine. The GDC supports several cancer genome programs at the NCI Center for Cancer Genomics (CCG), including The Cancer Genome Atlas (TCGA), Therapeutically Applicable Research to Generate Effective Treatments (TARGET), and the Cancer Genome Characterization Initiative (CGCI). The GDC Data Portal provides a platform for efficiently querying and downloading high quality and complete data. The GDC also provides a GDC Data Transfer Tool and a GDC API for programmatic access.

• Resource
• dkNET
• 11 years ago - submitted by Ko-Wei Lin

Molecular biology software for DNA cloning and analysis and construct preparation. Serial Cloner provides tools for analyzing and manipulating sequences and assists in setting up new sub-cloning projects and in preparing electronic versions of these constructs. The software reads and writes DNA Strider-compatible files and imports and exports files in the universal FASTA format.

• RRID-Legacy
• 11 years ago - submitted by Franck Perez

A database which indexes preprints from arXiv q-bio, PeerJ Preprints, Figshare, bioRxiv, F1000Research, and The Winnower.

• Resource
• SciCrunch
• 11 years ago - submitted by Jamie Li

A set of software tools used for morphometric analysis and visualization of the 3D structure of neurons. Py3DN works exclusively with data collected with the commercial system Neurolucida.

• RRID-Legacy
• 11 years ago - submitted by David Kennedy

A database which provides results of comprehensive immunogenomic analyses of next generation sequencing data for 19 solid cancers from The Cancer Genome Atlas and other datasources. The database can be queried for the gene expression of specific immune-related gene sets, cellular composition of immune infiltrates (characterized using gene set enrichment analyses and deconvolution), neoantigens and cancer-germline antigens, HLA types, and tumor heterogeneity (estimated from cancer cell fractions). It also provides survival analyses for different types immunological parameters.

• Resource
• RRID-Legacy
• 11 years ago - by Anonymous

A commercial biomaterial analysis service dedicated to developing antibody protein sequencing and characterization technologies. The main service it offers is antibody de novo sequencing. Both heavy and light chains are directly sequenced using multiple enzyme digestion and high resolution LC-MS/MS. The sequencing process does not require hybridoma, mRNA, or other sequence information. Rapid Novor also offers to make recombinant versions of antibody proteins sent in for sequencing.

• Organization
• SciCrunch
• 11 years ago - submitted by Mingjie Xie

A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen