Curator Dashboard

Software suite for image acquisition and analysis. The software can be paired with high-quality cameras to maximize output quality and export it for sharing and research applications.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

An imaging system that can be used in lieu of conventional light microscopy. The specimen, rather than being viewed through the eyepiece of the microscope, is displayed a monitor after the system has scanned it at the desired resolution. This is done by a series of scans of single images acquired through the scanning process being automatically stitched together to make the ultimate seamless overview image through the "virtual slide". The digital images can be saved to a web-based database so that it can be accessible for online conferences.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software used for quantitative Western blot imaging and analysis. This software is compatible with several dyes and kits, providing extra flexibility for application. This software is designed to be able to look at multiple proteins simultaneously on a single assay. This software is sensitive enough to distinguish co-migrating proteins, such as phosphorylated and unphosphorylated isoforms.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software to apply modeling techniques directly to individual pixels within an image and create a parametric map from it. The resulting outcomes show the values within the model parameter in each image pixel. This is used to make quantitative tissue properties easier to visualize and compare with information from other sources. Furthermore, the quantitative maps can then be statistically analyzed within the software using a step-by step method. This tool is designed to be used with the PKIN tool.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

An image analysis software.

• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A framework for generating Tract Profiles of tissue properties for major fiber tracts in healthy and diseased brains. Online documentation can be found at: https://github.com/yeatmanlab/AFQ/wiki. AFQ has been tested for MATLAB r2009b through MATLAB r2014b. It requires functions from the MATLAB stats toolbox, vistasoft and SPM.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Maryann Martone

A forum for preclinical data sharing and interpretation to enhance its utility for clinical research and development. The forum allows researchers to communicate and collaborate on modern preclinical issues and data sharing.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A tool that allows users to search for appropriate, commercially available antibodies for research purposes, and to match each antibody to its respective genomic identifiers. The antibodies are screened by Western blot and the results are listed on AbMiner. AbMiner also includes the diluitons used and vendor information for all antibodies. Users can conduct general or advanced searches and browse antibodies by gene.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

MATLAB and Python 3 high-level programming interface for MySQL databases to support data processing chains in science labs. Specifically designed to provide robust and intuitive data model for scientific data processing chains.Used for scientific data pipelines and workflow management.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A database of protein disorder and mobility annotations. The database features three levels of annotation: manually curated data (which are extracted from the DisProt database), indirect data, and predicted data. Additional annotations are included from external sources, including UniProt, Pfam, PDB, and STRING.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A commercial cap product that records fNIR signals from the participant. NIRSport integrates for concurrent measurements with EEG, fMRI, eye-tracking, cochlear implants, TMS, tDCS, EMG, pulse oximetry, and other modalities for concurrent measurements. Researchers can conduct tandem studies with two separate systems synchronized to operate simultaneously.

• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

Commercial software tool designed to function as a multiplatform instrument controlling environment for NIRx products. Its features include the ability to run full or partial sensing configurations, montage views and viewing options, and a real-time system status reporting display.

• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

A community encyclopaedia that links brain research concepts with data, models and literature from around the world. It is an open project where users can participate and contribute to the global research community.

• Resource
• NIF
• 10 years ago - submitted by Maryann Martone

A program that searches PubMed to generate a heat map using a user's search terms. It also allows you to see over the years how many publications there are with the user's search term(s).

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• NIF
• 10 years ago - submitted by Amanda Bischoff-Grethe

A collection of big data analytics tools. FlashX performs data analytics in the form of graphs and matrices and utilize solid-state drives (SSDs) to scale to large datasets in a single machine. It has three main components: FlashGraph, FlashMatrix, and FlashR. FlashGraph is a general-purpose programming framework with a vertex-centric programming interface for large-scale graph analysis. FlashMatrix is a matrix computation engine that provides a small set of generalized matrix operations to express varieties of data mining and machine learning algorithms. FlashR is an extension of the R programming framework to process datasets at a scale of terabytes with the speed of optimized parallel C code.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Diabetes Research Centers (DRC) is an integrated program of diabetes, endocrinology and metabolism research.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A repository of human tissue samples collected during the LANDMark study (Longitudinal Assessment of Neuropathy in Diabetes using novel ophthalmic markers). The LANDMark Biobank longitudinal dataset contains blood and tissue (skin) samples and matching detailed phenotypic data of three microvascluar complications of type 1 diabetes: neuropathy, nephropathy and retinopathy.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Provides access to resources T1D researchers need to conduct clinical studies. Data sets from their clinic registry is openly available, as are new study results. They also offer use of T1D Discovery Tool, which allows users to search different fields from registry data, and T1D Exchange Biobank, which offers specimen types such as serum, plasma, white blood cells, DNA, and RNA.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A google drive interface for scientific big data. CyVerse cyberinfrastructure is applicable to all life sciences disciplines and works equally well on data from plants, animals, or microbes. It provides life scientists with computational infrastructure to handle large datasets and complex analyses. Its extensible platforms provide data storage, bioinformatics tools, image analyses, cloud services, and APIs.

• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

A customized software application that generates a Global Unique Identifier for each study participant. The GUID is a universal subject ID that allows researchers to share data specific to a study participant without exposing personally identifiable information (PII). The GUID has been approved by the NIH Office of General Counsel.

• Resource
• SciCrunch
• 11 years ago - submitted by Anita Bandrowski