Curator Dashboard

Hardware for performing patch clamping for in vivo cell recordings of freely moving animals. The setup consists of a support column with an enlarged base for mounting the assembly, a clip which allows for flexibility in placement, and an actuated axis fitted with a capillary holder for the reference electrode.

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• RRID-Legacy
• 9 years ago - by Anonymous

Origin Software from OriginLab:it is the data analysis and graphing software

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• RRID-Legacy
• 9 years ago - submitted by Edyta Vieth

Software plug-in for ImageJ that was developed for registering 3D volumes of images., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 9 years ago - by Anonymous

Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors.

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• RRID-Legacy
• 9 years ago - by Anonymous

Programming language framework for HTML, CSS, and JS. It is used for developing responsive, mobile projects on the web.

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• RRID-Legacy
• 9 years ago - submitted by Andrew King

Software toolkit for a charting library written in pure JavaScript. It offers a way to add interactive charts to a web site or web application.

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• RRID-Legacy
• 9 years ago - submitted by Andrew King

University of Western Ontario; Department of Computer Science; London; Ontario; Canada

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• SciCrunch
• 9 years ago - submitted by Edyta Vieth

Software for mapping of molecular phenotypes that implements a new permutation scheme to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels in large-scale datasets. It is used to discover quantitative trait loci, multi-dimensional genomic datasets combining DNA-seq and ChiP-/RNA-seq.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Web application for the reconstruction of ancestral sequences. It computes maximum likelihood ancestral sequence reconstruction based on the phylogenetic relations between homologous sequences.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software application for diverse collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks, such as filtering, merging, splitting, sorting, trimming, search/replace, etc. Input and output files can be gzipped (format is automatically detected) and individual Fastaq commands can be piped together.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software application for indexing and extracting sequences and subsequences from FASTA files. It will only generate indexes for FASTA files in which the sequences have self-consistent line lengths.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software package for aligning long sequencing reads as a diploid-aware genome assembler. Used for assembling non-inbred or rearranged heterozygous genomes.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software package for sequence alignment of pairwise sequence comparison. Exonerate can be used to align sequences using many alignment models, exhaustive dynamic programming, or a variety of heuristics., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Source code for large-scale phylogenetic analyses on whole-transcriptome and whole-genome alignments using supercomputers.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Source code for EMBOSS commands to search for protein domains. Its functions include removing redundant and fragment sequences from DHF files, generating PSI-BLAST hits (DHF file) from a DAF file, removing ambiguous classified sequences from DHF files, and generating DHF files from keyword search of UniProt.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software commands for Extra EMBOSS and protein domain alignment. The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for protein domain search. It is a part of Embassy software package.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software that constructs triangulated surfaces for macromolecules. It generates three major macromolecular surfaces: van der Waals surface, solvent-accessible surface and molecular surface (solvent-excluded surface) and also identifies cavities which are inside of macromolecules. Used in accurate calculation of protein surfaces in the protein structural and functional studies including ligand-protein docking and virtual screening.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for Electronic PCR that estimates PCR barcode primers quality and develops new barcode primers. In conjunction with OBITools, users can postprocess ecoPCR output to compute barcode coverage and barcode specificity., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software for an efficient maximal exact match (MEM) computation program that does not use full text indexes, uses less space and is amenable to parallelization. It can be used as a stand alone application or a drop-in replacement for MUMmer3 system for rapidly aligning entire genomes.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman