Curator Dashboard

An organization which supports those with rare diseases and those researching rare diseases.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A database which contains detailed information rare diseases. The information is produced in collaboration with leading medical specialists and patient associations. New disease descriptions are added continuously and the texts are updated on a regular basis. Both the common names and the technical names for diseases are provided.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 18, 2018; A software which provides unbiased stereological estimates of numbers, lengths, areas, and volumes present in images that were captured by microscopes or virtual slides. This software is intended to estimate structural information in a 3D format from 2D tissue sections.<br/>There are other software tools at this company, but they have either changed names or are simply different software tools.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software for volume visualization that can be used by researchers to explore and analyze medical and scientific data. This software uses a variety of tools to load and visualize the data on either a 2D or 3D display. Theses tools include volume rendering, maximum intensity projections and oblique reformatting. Visualizations can be saved mid-session and be reopened at a later time.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software R package used for simplifying and analyzing Cufflink RNA-Seq output. This program takes various output files from a cuffdiff run and creates a SQLite database of the results that will describe the appropriate relationships between the genes, transcripts, transcription start sites and CDS regions.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software used to process stacks of digital images. All of the resulting images are processed to have the same dimensions and then are consolidated into a single image.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

A software that is used to analyze image stacks of biofilms that were recorded by confocal microscopes. While this program does not have any statistical calculation methods, it can extract a number of quantitative parameters from the images. This software was initially developed by Arne Heydorn and Bjarne Ersboll as a MatLab script until it was expanded into an independent software in 2008.

• Resource
• SciCrunch
• 10 years ago - submitted by Gabrielle Pine

Software package created to perform molecular dynamics. Molecular dynamics package mainly designed for simulations of proteins, lipids, and nucleic acids. Can also be used for research on non-biological systems, such as polymers.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A highly versatile software package for performing and analyzing scientific Molecular Dynamics many-particle simulations of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology. It can be used to simulate systems such as polymers, liquid crystals, colloids, ferrofluids and biological systems like DNA and lipid membranes.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An online tool for managing and viewing datasets. Data can be viewed in 2D or 3D with activation points as points clouds or projections on the cortex surface. Data can be imported as a NIfTI file or a list of activation peaks and results can be exported as a PDF file.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

A structural folding computational tool. The method is based on the assembly of supersecondary structural fragments taken from highly resolved protein structures using a simulated annealing algorithm.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

Center for resources to facilitate basic and preclinical applications of the transgenic Huntington's disease (HD) monkey model to advance scientific knowledge and the discovery of a cure for HD. Their resources include longitudinal biomaterials and MRI data, postmortem biomaterials, and research proposal assistance.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An NMR based method for protein folding prediction. Users can enter a UniProt identifier, FASTA sequences, or upload a file containing FASTA sequences and results are returned., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 10 years ago - submitted by Anita Bandrowski

A package of over twenty mass spectrometry-based tools primarily geared toward proteomic data analysis and database mining. It can be run from the command line, but is primarily used through a web browser, and there is a public website that allows anyone to use the software without local installation. Tandem mass spectrometry analysis tools are used for database searching and identification of peptides, including post-translationally modified peptides and cross-linked peptides. Support for isotope and label-free quantification from this type of data is provided. MS-Viewer software allows sharing and displaying of annotated spectra from many different tandem mass spectrometry data analysis packages. Other tools include software for analyzing peptide mass fingerprinting data (MS-Fit); prediction of theoretical fragmentation of peptides (MS-Product); theoretical chemical or enzymatic digestion of proteins (MS-Digest); and theoretical modeling of the isotope distribution of any chemical, including peptides (MS-Isotope). Searches using amino acid sequence can be used to identify homologous peptides in a database (MS-Pattern); the use of the combination of amino acid sequence and masses can be used for homologous peptide and protein identification using MS-Homology. Tandem mass spectrometry peak list files can be filtered for the presence of certain peaks or neutral losses using MS-Filter. Given a list of proteins, MS-Bridge can report all potential cross-linked peptide combinations of a specified mass. Given a precursor peptide mass and information about known amino acid presence, absence, or modifications, MS-Comp can report all amino acid combinations that could lead to the observed mass.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

A Python library which provides Python access to and interaction with Galaxy's API and CloudMan. The library allows users to create a CloudMan compute cluster via an API and directly from a local machine, reconnect to an existing CloudMan instance and manipulate it, and interact with Galaxy via a straightforward API and an object-oriented API. The library itself can be used with either service irrespective of the other.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

Elixir Interoperability Platform to help people and machines to discover, access, integrate and analyse biological data. Encourages life science community to adopt standardized file formats, metadata, vocabularies and identifiers and works internationally to achieve its goals. Bioinformatics resource registry that provides scientific and technical information about analytical tools and data services for bioinformatics. Gateway to databases and tools for life science data analysis.Provides comprehensive and up-to-date catalogue of resources that are interactive and downloadable, and that offer programmatic access. The registry also allows the community to upload their own resources to the registry following a simple log in procedure.

• Resource
• RRID-Legacy
• 10 years ago - by Anonymous

A portal that provides visualization, analysis and download of large-scale cancer genomics data sets.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

The Aging, Dementia and Traumatic Brain Injury Study is a detailed neuropathologic, molecular and transcriptomic characterization of brains of control and TBI exposure cases from a unique aged population-based cohort from the Adult Changes in Thought (ACT) study. The study contains six data sets: histology and immunohistochemistry, in situ hybridization, rna-seq, protein quantification by luminex, isoprostane quantification, and specimen metadata.

• Resource
• Aging
• 10 years ago - by Anonymous

A center that conducts basic science and clinical research concerning spinal cord injury located at both the University of California San Francisco and the Zuckerberg San Francisco General Hospital.

• odc-sci
• 10 years ago - submitted by Adam Ferguson

A non-profit organization that awards grants to a broad spectrum of charities, including those that benefit spinal cord injury efforts. The Foundation is primarily dedicated to funding extensive research, education and quality of life programs for improving the lives of people affected by spinal cord injury.

• odc-sci
• 10 years ago - submitted by Maryann Martone