Curator Dashboard

Software for profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data Used for millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Database of naturally processed MHC-restricted peptide ligands and epitopes for customized computational vaccinology.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database for MHC antigenic peptide of Mycobacterium tuberculosis. It aims to make a comprehensive repository of synthetic antigenic peptides predicted from several MHC predication servers.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Software for error correction of optical mapping data.

• RRID-Legacy
• 9 years ago - submitted by Kingshuk Mukherjee

Software for dynamic clamping. It uses National Instruments Boards.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy.

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• RRID-Legacy
• 9 years ago - by Anonymous

Database that consolidates information on genes and phenotypes across multiple resources and allows tracking and exploring of the associations. Part of Gemma, a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick

Web based software for analyzing genomic variants CNVs, SNVs, and Indels and phenotypes. It aims to represent the relationships between discovered variants and phenotypes.

• RRID-Legacy
• 9 years ago - submitted by Devon Gilpatrick

Open source software package for comparative sequence analysis using stochastic evolutionary models. Used for analysis of genetic sequence data in particular the inference of natural selection using techniques in phylogenetics, molecular evolution, and machine learning.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Web application for creating, collecting, testing, and sharing metadata. It provides templates for metadata models or structures, and is capable of testing those models quickly using real data.

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• SciCrunch
• 9 years ago - submitted by Jeffrey Grethe

Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle.

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• SciCrunch
• 9 years ago - submitted by Jeffrey Grethe

Software toolkit which automates the loading, storage, linkage and provision of data sets. It also cleans, transforms and documents provenance meta-data and domain knowledge to make data sets “research ready”.

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• SciCrunch
• 9 years ago - submitted by Emily Jefferson

Web page for cyclic immunofluorescence. It lists several downloadable data and software pertaining to cyclic immunofluorescence.

• RRID-Legacy
• 9 years ago - submitted by Jia-Ren Lin

Software for image processing of cyclic immunofluorescence data. It performs alignment by simultaneous harmonization of layer/adjacency registration.

• RRID-Legacy
• 9 years ago - submitted by Jia-Ren Lin

Virtual resource for neuroscience.

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• NIF
• 9 years ago - submitted by Matt Travers

THIS RESOURCE HAS BEEN DISCONTINUED. Documented May 7, 2018. Software module for biological confocal laser scanning microscope FV 1200. Olympus's proprietary super resolution technology FV - OSR (Olympus Super Resolution) realizes XY resolution of about 120 nm exceeding the conventional 3D confocal microscope.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software for fluorescence lifetime imaging and correlation. SymPhoTime 64 is the data acquisition software for PicoQuant's time-resolved confocal microscope MicroTime 200 and LSM upgrade kits.

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• RRID-Legacy
• 9 years ago - by Anonymous

Atlas of human white matter diffusion streamlines for predicting medium/long range brain connectivity. The atlas uses the popular Harvard-Oxford (H-O) cortical and subcortical atlas as endpoint targets so that WM connectivity deficits can be analyzed in conjunction with corresponding GM deficits.

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• RRID-Legacy
• 9 years ago - submitted by Timothy Herron

Software that allows you to quantify glucose homeostasis in type 2 diabetes and control subjects. OVAL also has the capacity to quantify sequential deterioration and monitor effects of intervention.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin