Curator Dashboard

Software tool to screen a nucleic acid sequence for vector contamination. Detects foreign DNAs such as vector, linker, adapter, and primer regions involved in nucleotide sequences by using blast search against vector sequence database. The main unit of this tool is vecscreen program obtainable from NCBI.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

System for sharing sleep data. Organization portal that aggregates, harmonizes, and organizes sleep and clinical data from individuals studied as part of cohort studies or clinical trials and provides suite of tools to facilitate data exploration and data visualization. National Heart, Lung, and Blood Institute resource designed to provide big data resources to sleep research community.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Portal for randomized controlled trial to compare effectiveness of bariatric surgery versus continuous positive airway pressure (CPAP) therapy for obstructive sleep apnea. Signals included in the polysomnography (PSG) montage are EEG, EMG, EOG, ECG, SpO2, airflow, CPAP pressure, CPAP flow, plethysmography, position, pulse, light, respiratory effort, snore.

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• SciCrunch
• 8 years ago - submitted by Sara Mariani

Software tool to explore and analyze mutagenic factors leading to tumors to decipher cancer genetic heterogeneity.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for discovering relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Project to generate extensive biomarker data from Framingham Heart Study participants using immunoassays, proteomics, metabolomics/lipomics, and gene expression and microRNA profiling to advance personalized medicine through biomarker discovery and validation.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool as a Common Workflow Language (CWL) based automated bioinformatics workflow to assemble haploid/diploid eukaryote genomes of non-model organisms using PacBio long-reads and Illumina short-reads.

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• RRID-Legacy
• 8 years ago - submitted by Pasi Korhonen

Commercial provider of antibodies, antigens and recombinant proteins from Braintree, Massachusetts . Biotechnology company which provides custom oligonucleotides synthesis service.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software as an interactive web tool to compare two or more groups of samples in a Gene Expression Omnibus (GEO) series regardless of data type and quality. Used to identify genes that are differentially expressed across experimental conditions. Results are presented as a table of genes ordered by significance.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package available through Fiji to image large biological specimen at high resolution. Comes with 2 different plugins to reconstruct big images/stacks : Pairwise Stitching to stitch two 2d-5d images, and Grid/Collection Stitching to stitch an arbitrary amount of 2d-5d input images.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software package for diffusion imaging analysis and visualization. Module of Vistasoft for processing diffusion weighted data and measuring and visualizing fractional anisotropy, mean diffusivity, axial and radial diffusivity, RGB fiber direction maps and analysis of MRI data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for reconstruction, visualization and analysis of neuronal processes .Fiji's framework for semi-automated tracing of neurons and other tube-like structures (blood vessels) through 3D image stacks.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Python library for materials analysis codes. Defines core object representations for structures and molecules.

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• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Software tool for phonetics research to analyse, synthesize, and manipulate speech.

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• SciCrunch
• 8 years ago - submitted by Robert Oostenveld

Software tool implemented in R S4 as an analytic pipeline for processing single-cell RNA-seq data from a whole organ or sorted cells. Used for Single Cell RNA-Seq profiling analysis.

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• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for assay data analysis.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for comparing lists with Venn's diagrams.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software package for advanced image processing, analysis, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets.

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• RRID-Legacy
• 8 years ago - by Anonymous

Portal for a multi-cohort study focused on sleep-disordered breathing and cardiovascular outcomes implemented by the National Heart Lung and Blood Institute. Recorded signals are: EEG, ECG, EOG, SaO2, HR, EOG, EMG, respiratory inductance plethysmography, respiration (thermistor), position, light.

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• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Software analysis tools for electrophysiological somatosensory cortex databank. Allows to estimate the information content of spiking in single neuron resolution. It accompanies the open source intracellular recording database by Lantyer and colleagues.

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• RRID-Legacy
• 8 years ago - submitted by Tansu Celikel