Curator Dashboard

Office of Cyber Infrastructure and Computational Biology of NIAID.

• Organization
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Analysis environment and collection of individual software tools to process raw shotgun metagenome or metatranscriptome sequencing data for quantitative microbial community profiling. Used for a metaomics data analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Cloud based platform for simplified, standardized and reproducible microbiome data analysis. Allows users to process microbiome datasets through pipelines of existing software tools.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Web based open access platform for global drug resistant tuberculosis data sharing and analysis. The NIAID TB Portals program and consortium of clinicians and scientists from countries with a heavy burden of TB, especially drug resistant TB, to collect TB data.

• Resource
• SciCrunch
• 8 years ago - submitted by Ko-Wei Lin

Resource of chemokines and receptors with detailed information including taxonomy, nomenclature, structure, physiological function, tissue information, and phenotype, collected from IUPHAR/BPS, UniGene, and UniProt public databases.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software as graphical and interactive tool dedicated to 1D spectra processing for NMR-based metabolomics.

• Resource
• SciCrunch
• 8 years ago - submitted by Daniel Jacob

Software program for preprocessing resting state functional magnetic resonance imaging (rsfMRI) measurements and calculating region of interest based whole brain functional connectivity.

• Resource
• SciCrunch
• 8 years ago - submitted by Pál Vakli

Software program to implement transfer learning for a connectome convolutional neural network trained to classify functional connectomes using Tensorflow.

• Resource
• SciCrunch
• 8 years ago - submitted by Pál Vakli

Software for multichannel dynamic fluorescence image acquisition and analysis by INDEC BioSystems.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for estimating pairwise relatedness from next-generation sequencing data.

• Resource
• SciCrunch
• 8 years ago - submitted by thorfinn korneliussen

Portal for sleep-disordered breathing (SDB) in an elderly cohort of Japanese-American men under surveillance for Alzheimer disease (AD) and other dementias. Data to assess relationships between SDB and cognitive performance in late life.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

CHAT is a multi-center randomized trial comparing early adenotonsillectomy to watchful waiting plus supportive care. It includes PSG recordings from 464 children aged 5-9.9 years with mild to moderate obstructive sleep apnea. The polysomnographic (PSG) montage includes the following signals: EEG, ECG, EOG, SaO2, EMG, plethysmography, airflow, nasal pressure, respiratory effort, position, capnography, snore.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Portal for family based study of sleep apnea. Contains data for quantifying the familial aggregation of sleep apnea. The polysomnographic (PSG) montage signals: EEG, ECG, EOG, EMG, SpO2, plethysmography, airflow (thermistor), nasal pressure, respiratory effort, position, snore.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Portal for population based pediatric cohorts studied with objective sleep studies. Includes children with in-home sleep studies, acoustic reflectometry, anthropometry, spirometry, blood pressure (BP), and neuropsychology (NP) and behavioral assessments. Signals recorded include EEG, ECG, EOG, EMG, SpO2, airflow (thermocouple) nasal pressure, respiratory effort, position, plethysmography, light, HR.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Portal for sleep study to address challenges in conducting future large-scale trials of sleep apnea treatment. Includes data from sleep apnea patients with cardiovascular disease or risk factors. Signals included in the polysomnography (PSG) montage are ECG, SpO2, airflow, nasal pressure, position, pulse, respiratory effort, snore, tidal volume.

• Resource
• SciCrunch
• 8 years ago - submitted by Sara Mariani

Software tool for quantifying abundances of transcripts from RNA-Seq data or target sequences using high-throughput sequencing reads.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 12,2024. Software tool for DNA sequence submission. Used for submitting and updating entries to the GenBank or EMBL sequence databases.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Portal to map and identify genetic variants that predispose to type 2 diabetes mellitus (T2D) or are responsible for variability in diabetes-related quantitative traits. Used for analysis of affected-sibling-pair (ASP) families in Finland, and association fine mapping based on these family members and additional T2D cases and controls.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Collection of curated, non-redundant genomic DNA, transcript RNA, and protein sequences produced by NCBI. Provides a reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis, expression studies, and comparative analyses. Accessed through the Nucleotide and Protein databases.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Database as a division of GenBank that contains sequence data and other information on single-pass cDNA sequences, or Expressed Sequence Tags, from a number of organisms.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth