Curator Dashboard

Software toolkit for transcriptomics data meta-analysis. It integrates metaMA and metaRNAseq packages into Galaxy, carries out meta-analysis of gene expression data, handles microarray data from Gene Expression Omnibus (GEO) database, and more.

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• SciCrunch
• 8 years ago - submitted by Samuel Blanck

Software toolkit for phenotypic correlation estimation and multiple testing correction (Spectral Decomposition, SpD) for human phenome using genome-wide association study (GWAS) summary statistics. It is a command line R based tool.

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• SciCrunch
• 8 years ago - by Anonymous

Software toolbox for Statistical Parametric Mapping (SPM) to fit reference-region kinetic models (SRTM, SRTM2, Patlak Reference and Logan Reference Plot) are currently available in QModeling to dynamic PET studies. Used for the analysis of brain imaging data sequences.

• RRID-Legacy
• 8 years ago - submitted by David Kennedy

Donkey polyclonal Secondary Antibody to Mouse IgG - H&L (Alexa Fluor® 488)

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• RRID-Legacy
• 8 years ago - submitted by liu haixin

Donkey polyclonal Secondary Antibody to Goat IgG - H&L (Alexa Fluor® 647)

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• RRID-Legacy
• 8 years ago - submitted by liu haixin

Donkey polyclonal Secondary Antibody to Goat IgG - H&L (Alexa Fluor® 647)

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• RRID-Legacy
• 8 years ago - submitted by liu haixin

Program based on convolutional neural networks for spike detection from calcium traces. It is written in Python and Keras.

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• RRID-Legacy
• 8 years ago - by Anonymous

A Matlab adapter class and user interface to control the Reglo ICC peristaltic pump provided by Ismatec.

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• RRID-Legacy
• 8 years ago - by Anonymous

It is non-graphical user interface in MATLAB which relies on keyboard callback functions. Used for analyzing big data sets.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software library of extended edit similarity measurement for high dimensional discrete-time series signal. Python module that offers functions for measuring the similarity between two segmented multi-neuronal spiking activities with implemented extended edit similarity measurement.

• RRID-Legacy
• 8 years ago - submitted by Keita Watananabe

Database as an open science framework with a scientific data extracted from scientific literature about various altered states of consciousness assessed with questionnaires. Used to compare what experiences are elicited by different drugs and non-pharmacological methods that induce altered states to help to understand human consciousness functions. Is listed by Neuroimaging Informatics Tools.

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• NIF
• 8 years ago - submitted by Matt Travers

Software toolbox based on FSL command line tools that performs masked independent component analysis and related analyses in an integrated way within a spatially restricted subregion of the brain. Used for investigating functional connectivity in functional magnetic resonance imaging data in the field of neuroimaging.

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• NIF
• 8 years ago - submitted by Matt Travers

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 17, 2024. Software application as a high-accuracy quantification function that supports various biological specimens. Used in KEYENCE automated imaging system for images captured using BZ series fluorescence microscopes.

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• RRID-Legacy
• 8 years ago - by Anonymous

Portal for lung histochemistry data. For structural and molecular data regarding normal perinatal and postnatal lung development in the mouse and human. For public sharing of data sets, establishing a repository of young human lung tissues obtained through organ donor organizations, and developing a comprehensive lung ontology .Contains lung images and transcriptomic, proteomic, and lipidomic human and mouse data and provides scientific information to stimulate interest in research careers. Used to serve as a research resource and public education tool.

• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software as an open source web server that automatically generates RNA-seq data analysis of jupyter notebooks. It allows creation and containment of documents that have live code, visualizations and narrative text.

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• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software as an open source machine learning framework for everyone. Library for high performance numerical computation. Allows deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Software to automate analysis of electrographic seizures based on EEG or LFP data, featuring customizable thresholds and parameters for event detection and parameter setting.

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• RRID-Legacy
• 8 years ago - by Anonymous

JavaScript plug-in software application for web environments to analyze data. It is an interactive Venn diagram viewer.Used for comparing lists with Venn Diagrams. It handles up to six input lists and presents results using classical or Edwards-Venn layouts. User interactions can be controlled and customized.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software as R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding. Used for high-dimentional data visualisation.

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• RRID-Legacy
• 8 years ago - by Anonymous

Software R package designed for QC, analysis, and exploration of single cell RNA-seq data. Enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. Used for quality control, analysis, and exploration of single-cell RNA sequencing (scRNA-seq) data.

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• RRID-Legacy
• 8 years ago - by Anonymous