Curator Dashboard

Software that detects kinase-specific phosphorylation sites. GPS provides a platform able to perform its prediction based on a group-based phosphorylation scoring algorithm. It allows users to query multiple protein sequences through a batch prediction mode.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Supplier of Frogs and Tadpoles for the scientific community.

• Resource
• SciCrunch
• 8 years ago - submitted by Philip Leo Pascual

Software toolkit for semantic integration of multi-modal brain data. It is used to collect, structure, connect, analyze and re-use brain data.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software plugin for Fiji/ImageJ that performs retrospective image correction for optical microscopy. It is based on low rank and sparse decomposition, which corrects both shading in space and background bleaching in time.

• RRID-Legacy
• 8 years ago - submitted by Jia-Ren Lin

Center that is part of the NIH Library of Integrated Network-based Cellular Signatures (LINCS) Program. Its goals are to collect and disseminate data and analytical tools needed to understand how human cells respond to perturbation by drugs, the environment, and mutation.

• RRID-Legacy
• 8 years ago - submitted by Jia-Ren Lin

Database of death record information on file in state vital statistics offices. Working with these state offices, the National Center for Health Statistics (NCHS) established the NDI as a resource to aid epidemiologists and other health and medical investigators with their mortality ascertainment activities.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Ultrafast and memory efficient tool for aligning sequencing reads to long reference sequences. Supports gapped, local, and paired end alignment modes. More suited to finding longer, gapped alignments in comparison with original Bowtie method.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Instrument that electronically monitors cells grown in tissue culture. It is a real-time, label-free, impedance-based method to study the activities of cells. Used for analysis in cell biological dynamics for cells that do not form tight monolayers such as cancer cell lines. The system supports communication to a PC, allowing data acquisition, analysis, and storage.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Python based tools to process, visualize and analyse high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. Implemented within Galaxy framework. Used to perform complete bioinformatic workflows ranging from quality controls and normalizations of aligned reads to integrative analyses, including clustering and visualization approaches.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software application to perform systematic and collaborative curation of neuroscientific literature. Graphical User Interface (GUI) for the Python package NeuroAnnotation Toolbox (NAT). Used for the systematic annotation of relevant statements and model parameters to be traceable, reusable across projects, structured with controlled vocabularies.

• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Mouse Monoclonal Antibody to Glial Fibrillary Acidic Protein clone 2A5, useful as a human GFAP capture reagent in ELISA. Figure shows western blot analysis of equal amount of total protein from different tissue lysates  and recombinant proteins solutions using mouse mAb to GFAP, MCA-2A5, dilution 1:2,000 in green: [1] protein standard (red), [2] rat brain, [3] rat spinal cord, [4] mouse brain, [5] mouse spinal cord, [6] pig brain, [7] rat recombinant GFAP, [8] human recombinant GFAP. Bands around 50kDa correspond to alternative transcripts and proteolytic products of GFAP. Note that MCA-2A5 antibody has significantly stronger reactivity with pig and human GFAP as compared to rodent, suggesting that it binds to an epitope which is not totally conserved across mammalian sequences.

• Resource
• SciCrunch
• 8 years ago - submitted by Gerry Shaw

Java based conversion tool for conversion of data from Proteomics files or a LIMS (Laboratory Information Management System) database into standard formats. Used to support wet-lab scientists in creating proteomics data files ready for upload into the public repositories.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software as a scalable open-source service for platform-independent interactive visual analysis of biomedical data. It is a service and a library that work in tandem to equip existing platforms with visual analytical capabilities for explorative data analysis.

• Resource
• SciCrunch
• 8 years ago - submitted by Sascha Herzinger

Software tool as an R package for personalized pathway-based classification modeling using metabolomics data. Provides personalized pathway deregulation measurements (PDS scores) and offers a standardized classification model for biomarker prediction.

• Organization
• SciCrunch
• 8 years ago - submitted by FADHL ALAKWAA

Software toolkit for transcriptomics data meta-analysis. It integrates metaMA and metaRNAseq packages into Galaxy, carries out meta-analysis of gene expression data, handles microarray data from Gene Expression Omnibus (GEO) database, and more.

• Resource
• SciCrunch
• 8 years ago - submitted by Samuel Blanck

Software toolkit for phenotypic correlation estimation and multiple testing correction (Spectral Decomposition, SpD) for human phenome using genome-wide association study (GWAS) summary statistics. It is a command line R based tool.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Software toolbox for Statistical Parametric Mapping (SPM) to fit reference-region kinetic models (SRTM, SRTM2, Patlak Reference and Logan Reference Plot) are currently available in QModeling to dynamic PET studies. Used for the analysis of brain imaging data sequences.

• RRID-Legacy
• 8 years ago - submitted by David Kennedy

Donkey polyclonal Secondary Antibody to Mouse IgG - H&L (Alexa Fluor® 488)

• Resource
• RRID-Legacy
• 8 years ago - submitted by liu haixin

Donkey polyclonal Secondary Antibody to Goat IgG - H&L (Alexa Fluor® 647)

• Resource
• RRID-Legacy
• 8 years ago - submitted by liu haixin

Donkey polyclonal Secondary Antibody to Goat IgG - H&L (Alexa Fluor® 647)

• Resource
• RRID-Legacy
• 8 years ago - submitted by liu haixin