Curator Dashboard

Software package for processing two-photon recordings. Available together with a graphical user interface that allows manual curation of the results. Used in two-photon microscopy for the analysis of data from two-photon imaging. Registers raw movies, detects active cells, extracts their calcium traces and infers their spike times.

• Resource
• NIF
• 8 years ago - submitted by Maryann Martone

Web interface that facilitates open science for neuroscience community by simplifying global access to and sharing of datasets and tools. Portal internalizes typical data cycle of research project, beginning with data acquisition, followed by data processing with published tools, and ultimately publication of results with link to original dataset. Platform to form interactive network of collaborations in brain research, interdisciplinary student training, international partnerships, clinical translation and open publishing. Provides unified interface to Canadian neuroscience research community. Open neuroscience research with sharing of both data and methods, to create large-scale databases, development of standards for sharing, facilitation of advanced analytic strategies, open dissemination to global community of neuroscience data and methods, and establishment of training programs for next generation of computational neuroscience researchers.

• Organization
• NIF
• 8 years ago - submitted by Maryann Martone

R24 OD018250 We are developing an in-depth, easily accessible annotation of the dog genome to support disease research. The domestic dog is an important model for a wide variety of human diseases, including cancer, inflammatory disease, cardiovascular diseases and neurological and behavioral traits. We are using RNA-Seq to generate a more complete gene set and ChIP-seq to map histone marks implicating different regulatory states in different tissues. We are integrating this new data with available SNP data sets, published association signals, and other existing genome annotations to generate a resource easily accessible to the research community. The annotation will be served on the CanFam3.1 genome using the UCSC browser through a Track Hub that we build and manage.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Software tool for flow and image cytometry data analysis by De Novo Software company.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Web application viewer for large microscopy data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Portal for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. Provides functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive (ENA).Microbiome analysis resource in 2020.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Platform for computing management for data analysis on the cloud from the Lifebit company. Allows the computational analyses to be permanently linked to live analyses pipelines.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software to help users of targeted high throughput genomic sequencing data to accurately detect copy number variants (CNVs). Framework for running and evaluating other copy number detection tools.Used for evaluating and improving performance of CNV detection in exome and targeted sequencing data.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

2-NBDG (2-(N-(7-Nitrobenz-2-oxa-1,3-diazol-4-yl)Amino)-2-Deoxyglucose)

• Resource
• RRID-Legacy
• 8 years ago - submitted by Alex Tonks

Web based database interface for orthology prediction for the inference of orthologs among complete genomes. Used to relate genes across many species., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Ivan Erill

Software tool for analyzing recordings from multielectrodes. Source code for the Matlab implementation of the Kernel Current Source Density method. The method operates in one-, two-, and three-dimensional space to perform nonparametric estimation of transmembrane current sources from local field potentials recorded from arbitrarily distributed electrodes.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool to collect and analyse data on images of tissue slides or welled plates.Supports high-throughput immunofluorescence and immunohistochemistry, stereology, densitometry, and 3D modeling. Used in bioscience research in animal models and human biopsy, developmental neuroscience, traumatic brain/spinal cord injury, glaucoma, eye-movement disorders, cardiovascular disease and muscle disorders.

• Resource
• dkNET
• 8 years ago - submitted by Maryann Martone

Software tool that implements an integrated template matching framework for detecting and clustering spikes from multi-channel electrophysiological recordings.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Stay In Kovalam- Patrick Nivas Hotel.

• Resource
• SciCrunch
• 8 years ago - submitted by Priyanka Sharma

Fetal actocardiograph instrument provided by TOITU CO., LTD.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

The Wako HR series NEFA-HR(2) is an in vitro enzymatic colorimetric method assay for the quantitative determination of non-esterified fatty acids (NEFA) in serum.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Heike Muenzberg-Gruening

Software tool as a function in R to draw clustered heatmaps for better control over graphical parameters.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool to analyze the promoters of genes and look for motifs that are enriched in the target gene promoters relative to other promoters. Used for gene based analysis to provide a list of genes that should contain the same elements, such as genes that are co-regulated. It includes gene ontology analysis and can be used to look for RNA motifs in mRNAs.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

A peel and stick in-room ambulatory fetal monitoring solution by Monica Healthcare Ltd. Measures fetal heart rate (FHR), maternal heart rate (MHR) and uterine activity (UA).

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin