Curator Dashboard

Center that is a mouse cryoarchive and distribution center, which incorporates research goals that synergize with and extend the value of the resource. The goals of the UNC Chapel Hill center are to streamline and improve operating procedures, establish a comprehensive cryoarchive, develop and disseminate computational tools for mouse genotyping, and examine the effect of paternal age and epigenetics on mutation rate.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Center that imports, archives, maintains, and distributes mutant mouse alleles as live mice, frozen germplasm, stem cells, and molecular vectors for use in biomedical research. The MMRRC Davis receives transgenics, knockouts, and other kinds of mutant mouse lines at no cost to the donor, and after re-derivation and cryopreservation, distributes breeding stock, germplasm, cells, or tissues of genetically-defined and pathogen-free mice for a small fee to requesting investigators.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Center that supplies mice and conducts research projects focused on the role of mice as animal models. Some of these projects include refinement of models to ensure study reproducibility, as well as development and improvement of economical methods for cryopreservation of mouse strains.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Center for mutant mouse research and distribution. The objectives of the JAX MMRRC are to: identify and evaluate biomedically-significant mice, import/acquire and archive mouse strains, distribute mouse strains, and operate a control program to ensure genetic stability.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Software development environment that helps users build containerized software using Docker and Kubernetes softwares. It is executable on desktop and cloud, and allows access to a vast library of community containerized content in Docker Hub.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Python-based software for experimental neurophysiology. It includes support for patch-clamp electrophysiology, multiphoton imaging, scanning laser photostimulation, and many other experimental techniques.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software for Electrophysiology functions. It was developed by the Allen Institute.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software for filtering invalid Splice junctions from pre-aligned RNA-seq data. It takes as input a BAM file generated by an RNAseq mapper, then analyses and quantifies all splice junctions in the file before filtering (culling) those which are unlikely to be genuine.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Collects and provides data on the human genome and epigenome to facilitate genetic studies of type 2 diabetes and its complications. A component of the AMP T2D consortium, which includes the National Institute for Diabetes and Digestive and Kidney Diseases (NIDDK) and an international collaboration of researchers.

• Resource
• dkNET
• 8 years ago - submitted by Ko-Wei Lin

Software package to analyze, manage, and export recorded activity data from all Actiwatch models. Used to view long-term sleep/wake patterns, activity, illuminance, and event markers in an easy-to-read actogram format.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

Software tool for visual test battery in form of a free computer program.Can be run within your browser or download as a stand-alone program. Used by many vision labs, optometrists and ophthalmologists.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous

This equipment is used for the purpose of monitoring fetal status.

• Resource
• SciCrunch
• 8 years ago - submitted by Edyta Vieth

Open-source web application for managing digital repositories. Allows to create custom computing environments that can be shared and used by many remote users.Turns a GitHub repository containing a collection of Jupyter Notebooks into a collection of interactive notebooks. With Binder, open those notebooks in an executable environment, making your code immediately reproducible by anyone, anywhere.

• Resource
• dkNET
• 8 years ago - submitted by Maryann Martone

Biorepository of samples collected from patients with ALS, ALS-frontotemporal dementia (ALS-FTD), primary lateral sclerosis (PLS), progressive muscular atrophy (PMA), hereditary spastic paraplegia (HSP) and multisystem proteinopathy (MSP). Used by Consortium members and the scientific community to advance therapeutic development through study of the relationship between clinical phenotype and underlying genotype, and also through the discovery and development of biomarkers.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski

Open resource for nonhuman primate imaging.Used for aggregation independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI).Consortium and data collection for the neuroimaging community to map the non-human primate connectome. Anatomical, functional, and diffusion MRI datasets openly shared via the International Neuroimaging Data sharing Initiative (INDI).

• Organization
• NIF
• 8 years ago - submitted by Maryann Martone

Software package for processing two-photon recordings. Available together with a graphical user interface that allows manual curation of the results. Used in two-photon microscopy for the analysis of data from two-photon imaging. Registers raw movies, detects active cells, extracts their calcium traces and infers their spike times.

• Resource
• NIF
• 8 years ago - submitted by Maryann Martone

Web interface that facilitates open science for neuroscience community by simplifying global access to and sharing of datasets and tools. Portal internalizes typical data cycle of research project, beginning with data acquisition, followed by data processing with published tools, and ultimately publication of results with link to original dataset. Platform to form interactive network of collaborations in brain research, interdisciplinary student training, international partnerships, clinical translation and open publishing. Provides unified interface to Canadian neuroscience research community. Open neuroscience research with sharing of both data and methods, to create large-scale databases, development of standards for sharing, facilitation of advanced analytic strategies, open dissemination to global community of neuroscience data and methods, and establishment of training programs for next generation of computational neuroscience researchers.

• Organization
• NIF
• 8 years ago - submitted by Maryann Martone

R24 OD018250 We are developing an in-depth, easily accessible annotation of the dog genome to support disease research. The domestic dog is an important model for a wide variety of human diseases, including cancer, inflammatory disease, cardiovascular diseases and neurological and behavioral traits. We are using RNA-Seq to generate a more complete gene set and ChIP-seq to map histone marks implicating different regulatory states in different tissues. We are integrating this new data with available SNP data sets, published association signals, and other existing genome annotations to generate a resource easily accessible to the research community. The annotation will be served on the CanFam3.1 genome using the UCSC browser through a Track Hub that we build and manage.

• Resource
• SciCrunch
• 8 years ago - submitted by Isabella Froman

Software tool for flow and image cytometry data analysis by De Novo Software company.

• Resource
• SciCrunch
• 8 years ago - by Anonymous

Web application viewer for large microscopy data.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Anita Bandrowski